Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq44 129 5e-25
>seq44
Length=3047126
Score = 129 bits (142), Expect = 5e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| ||| || ||| || | || || ||||||||||| |||||
Sbjct 1396931 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 1396872
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||||| |||| || |||||||||| |||||| ||| | ||
Sbjct 1396871 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1396813
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | |||||||| || ||||| | || || |
Sbjct 1396812 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 1396753
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 1396752 CGAAAATCTGCAT 1396740
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | || |||||||| || |||||||| ||| |
Sbjct 758035 CCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 758094
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| |||||||||||||| || || || | ||||||||||| | ||
Sbjct 758095 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 758154
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| |||||| ||| | |||| | | || || || |||||
Sbjct 758155 ATACCCTCCTTGTCCTGAATCTTTGACTTGA-CGTTGTCGATGGTATCAGATGACTCCAC 758213
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || |||||||| || ||||| ||||||||
Sbjct 758214 TTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||||| | || || || ||||| || || ||
Sbjct 758578 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 758637
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | ||||| || |||||||||| |||||| ||||| | |
Sbjct 758638 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 758697
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | ||||| || || || || | || || ||
Sbjct 758698 GTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 758757
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 758758 GAAGATTTGCAT 758769
Score = 98.7 bits (108), Expect = 9e-16
Identities = 132/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||||||| || ||| || |||| || ||||||||||| |||||
Sbjct 758298 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 758357
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | ||| | | |||||||||| |||||| ||| | ||
Sbjct 758358 GATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 758416
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || ||| || |||||||| | ||||| || || || || | ||| || |
Sbjct 758417 TGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 758476
Query 35724 C 35724
|
Sbjct 758477 C 758477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450792861825480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |