Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq66 141 1e-28
>seq66
Length=2244893
Score = 141 bits (156), Expect = 1e-28
Identities = 565/882 (64%), Gaps = 18/882 (2%)
Strand=Plus/Plus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || ||||| || | ||| || ||||| ||| ||||| ||||||||||| |||||
Sbjct 1020821 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1020880
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|| ||||||| ||| |||| | || | || || | ||| | | ||| ||
Sbjct 1020881 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGAT 1020940
Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525
|||||| || ||| ||| || || || || | || | |||| ||||||||
Sbjct 1020941 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCC--TCGAATTCT 1020995
Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585
|| || | ||| | | ||||| ||||| || || |||||||| | ||| |
Sbjct 1020996 TCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAG 1021055
Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645
| | || ||| || ||||| || ||||| || ||||| ||||| | || || || | |
Sbjct 1021056 TTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 1021115
Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705
| | ||||| || || || || || || || ||||| | | ||| |
Sbjct 1021116 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCG 1021175
Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765
||||| || || || || || || | | | || || || || || || ||||| || | |
Sbjct 1021176 TGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACG 1021235
Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825
|||||||||||||| || |||||| ||||| || || ||||| || || |||| ||
Sbjct 1021236 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 1021295
Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885
|| || | ||| ||| || | || || ||| | || || || || ||
Sbjct 1021296 GTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 1021355
Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945
||||| || || || | ||||| || | ||||| || |||||||| ||||| ||
Sbjct 1021356 GCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCG 1021415
Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005
|| |||||| | || || || |||| ||| ||| || || || || ||
Sbjct 1021416 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAG 1021475
Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA----T 70061
| || ||||| || || || || |||| || | || | |||||| ||||
Sbjct 1021476 AGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 1021535
Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121
||| | | | | || | | || || | || |||||||| | ||| ||||| ||
Sbjct 1021536 CGCTCAATGT-TGTCTCCC---CAAACGCCAACAGCCACACGCATAATCATGTGCTGTGG 1021591
Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181
||| || || | || || | |||| || ||||| ||||| || || || ||
Sbjct 1021592 TCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCC 1021651
Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223
|| || | ||| ||||||| ||||| | ||| ||||
Sbjct 1021652 GAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCAGA 1021693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686907675186840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |