Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq66 141 1e-28 >seq66 Length=2244893 Score = 141 bits (156), Expect = 1e-28 Identities = 565/882 (64%), Gaps = 18/882 (2%) Strand=Plus/Plus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||||| ||||||||||| ||||| Sbjct 1020821 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1020880 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || ||||||| ||| |||| | || | || || | ||| | | ||| || Sbjct 1020881 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGAT 1020940 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGTG-TATATAGCCGTTCGAATTCA 69525 |||||| || ||| ||| || || || || | || | |||| |||||||| Sbjct 1020941 A---GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCC--TCGAATTCT 1020995 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || | ||| | | ||||| ||||| || || |||||||| | ||| | Sbjct 1020996 TCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAG 1021055 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | || ||| || ||||| || ||||| || ||||| ||||| | || || || | | Sbjct 1021056 TTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGG 1021115 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | ||||| || || || || || || || ||||| | | ||| | Sbjct 1021116 GCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCG 1021175 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| || || || || || || | | | || || || || || || ||||| || | | Sbjct 1021176 TGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACG 1021235 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 |||||||||||||| || |||||| ||||| || || ||||| || || |||| || Sbjct 1021236 TATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTG 1021295 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || | ||| ||| || | || || ||| | || || || || || Sbjct 1021296 GTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCA 1021355 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||||| || || || | ||||| || | ||||| || |||||||| ||||| || Sbjct 1021356 GCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCG 1021415 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005 || |||||| | || || || |||| ||| ||| || || || || || Sbjct 1021416 TCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAG 1021475 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA----T 70061 | || ||||| || || || || |||| || | || | |||||| |||| Sbjct 1021476 AGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACA 1021535 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| | | | | || | | || || | || |||||||| | ||| ||||| || Sbjct 1021536 CGCTCAATGT-TGTCTCCC---CAAACGCCAACAGCCACACGCATAATCATGTGCTGTGG 1021591 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 ||| || || | || || | |||| || ||||| ||||| || || || || Sbjct 1021592 TCGCTCAACAATCTTGCCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCC 1021651 Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 || || | ||| ||||||| ||||| | ||| |||| Sbjct 1021652 GAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCAGA 1021693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907675186840