Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq35 138 4e-27 >seq35 Length=1329723 Score = 138 bits (152), Expect = 4e-27 Identities = 365/544 (67%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| || ||||||||||| |||||||| || ||| |||||| | || || Sbjct 994890 TTCTGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTG 994831 Query 443397 TCTAGCCATGAACGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| || || | ||||| | |||| ||||||||||||| | ||| Sbjct 994830 ---AACGATGA-CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGA 994775 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGC 443512 ||| || ||| ||||| ||||| ||||||| || ||| | | ||||||| Sbjct 994774 CGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCCGAGGC 994715 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 || | |||||||| ||||| | ||||||||||| ||| ||||| |||| | Sbjct 994714 TCGATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCT 994655 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCA 443631 | | ||| | || ||| || || || || ||||| | | ||| || || || Sbjct 994654 GCTCATCGACAC-CTACGTC--AAGGAGCACAGCCAGCGCAACTACCTCTTCAACGC-CA 994599 Query 443632 T---GACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAG 443688 | ||||| || ||||| | | ||| || |||||| | ||||| || | || Sbjct 994598 TTGAGACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAG-GAC 994540 Query 443689 AAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTT 443747 || ||| | || | |||| || || || ||||||| ||||| || | || || Sbjct 994539 AAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC 994480 Query 443748 AGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGAC 443807 ||||| ||| || ||||||||||||||| | || ||| | || || |||| || ||||| Sbjct 994479 AGCGG-AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGAC 994421 Query 443808 CTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||| || ||| ||| |||||||| |||| |||||| || || || || Sbjct 994420 CTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCT 994361 Query 443868 CTAC 443871 | || Sbjct 994360 CCAC 994357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333334077295