Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq66 250 3e-61 seq35 104 3e-17 >seq66 Length=2244893 Score = 250 bits (276), Expect = 3e-61 Identities = 1025/1582 (65%), Gaps = 43/1582 (3%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 || |||||||| || || || |||||| || | || || | | || |||||| Sbjct 1020030 ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGG 1020089 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | ||||||| | | ||||||||| ||| | | Sbjct 1020090 ATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCG 1020149 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 || || |||| || |||||||| ||||| || || ||| | || | Sbjct 1020150 ACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGC 1020209 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || || ||||||||||| || |||| ||| || | ||| Sbjct 1020210 TGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTG 1020269 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||| || ||||| || || | | | |||||| |||| ||| | |||||| || | Sbjct 1020270 CTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGC 1020329 Query 110825 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||||| ||||| | | || | || | || || | | ||||||| |||||||| Sbjct 1020330 TCCTTGAGCGAGTCCCACTCCCACAGGTCAG-TGGGCTTGA-CATCCCACAAGTCAAACT 1020387 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT-AGGAACCTTGGGCTTCA 110941 | || | |||| || ||||| || |||| || | |||| |||| ||| | ||| Sbjct 1020388 GGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTT-- 1020445 Query 110942 GCCAA--TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 | ||| | || || | ||||| |||| ||||| || ||||| |||||||| | | Sbjct 1020446 GGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGT 1020504 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCG 111058 ||| ||| ||||| ||| || || | | || ||| | | || | || || Sbjct 1020505 TCAACTCGCGAGCTTCGGGTGATTCGAAAG-GAAGACGCAGAGCGAGGAAAGCGTCAGCA 1020563 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | |||||| |||| ||| || | ||| || || || || | Sbjct 1020564 AGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGA 1020623 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 ||||| || | || || |||| ||||| || || | ||| | ||| || | Sbjct 1020624 ACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACA 1020683 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAG 111234 || ||||| || | | | ||| | || || | || | | | |||| | || || Sbjct 1020684 TCGTGAAGCTTCTTAAAGTCATA---GC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAG 1020739 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || ||||| ||||| ||||| ||| || | | |||||| | || || Sbjct 1020740 AGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTC 1020799 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 1020800 AGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 1020859 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 ||||||||||| ||||| |||| | || ||||| ||||| | | || || | | Sbjct 1020860 GGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTA 1020919 Query 111415 CCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTG 111472 ||| | | || | ||| | | | | | | ||| | |||||| ||||||||| Sbjct 1020920 CCACAGCTTCTG-AGCTCGGATAGTCTTG-CGACCCTTGCCCTCCTTCTCGTACTTCTCA 1020977 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGAC 111530 || || || || || || || ||| || ||| | || || || || || || || | Sbjct 1020978 TACAGAGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGC 1021035 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | | | || ||| | ||| ||| |||||| ||||||||||| || || || ||||| Sbjct 1021036 ACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCA 1021093 Query 111589 CAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 || | || || || | ||| || ||||||| | || ||||| || | | Sbjct 1021094 GAGAGCGAGGAACAGGTCACGGGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGT 1021152 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----C 111703 |||||||||| | || ||| |||||||| ||||| || |||| || | | || | Sbjct 1021153 CAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGC 1021212 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | | ||| | || | || || | || ||| ||| || || |||||||| || Sbjct 1021213 GCTTGTTG-CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGG 1021271 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 || ||||| | || ||| || || || ||| ||| | || | | | Sbjct 1021272 ATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGG 1021331 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 |||| || || || ||||| |||||| ||| || || ||||| | | ||||| Sbjct 1021332 TGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTG 1021391 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||| ||||| || | | |||||||| ||||| ||| Sbjct 1021392 TCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA 1021451 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGG 112001 | | ||| |||||||| ||||||||||| || | || || | || | | || || Sbjct 1021452 GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCT--GG 1021509 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||||||||| | |||| ||||||| || || | ||| | || | Sbjct 1021510 ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCA 1021569 Query 112062 CCCGCATGAACATGTACTGTGG 112083 | ||||| | ||||| |||||| Sbjct 1021570 CACGCATAATCATGTGCTGTGG 1021591 >seq35 Length=1329723 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || || || || || || || |||||| || || Sbjct 994370 GCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 994429 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 994430 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 994489 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| || ||||| |||| |||||| | || ||||| ||| | ||| | | | Sbjct 994490 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGAT 994548 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| || || ||||| | |||||||| || || || | || | ||||| | || Sbjct 994549 CCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAA 994608 Query 122898 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 | | | | | | | | ||||| | ||| |||| || | || || || | Sbjct 994609 GAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 994667 Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 994668 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 994726 Query 123016 TGAACCTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 |||||||| |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 994727 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 994785 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131 |||||| |||||||||| ||||| | ||| || | || |||| || | ||||| Sbjct 994786 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 994845 Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 994846 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030971597600