Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq66 233 2e-56 seq35 138 1e-27 seq1 82.4 9e-11 >seq66 Length=2244893 Score = 233 bits (258), Expect = 2e-56 Identities = 1165/1831 (64%), Gaps = 41/1831 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || ||| ||| |||| | || ||||||||||| || |||||||| | Sbjct 1019836 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1019895 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || ||| | |||| Sbjct 1019896 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1019955 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| ||||| || || || || | ||| | | | Sbjct 1019956 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1020015 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | ||| ||||| |||||| |||| ||| ||| || || | || || | Sbjct 1020016 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1020075 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 || || ||||| || || | | | ||| | | ||||||| | | |||| Sbjct 1020076 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 1020135 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 118161 |||| ||| | | ||||||| |||| || |||||||| ||||| | Sbjct 1020136 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 1020192 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| | Sbjct 1020193 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 1020252 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | || Sbjct 1020253 CCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 1020312 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCC 118339 | | ||| |||| | |||||||| | |||||| | | || | || | | || | Sbjct 1020313 CGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCTTGAC 1020370 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | ||||| ||||||||||| || |||| || || || ||||||| |||| |||||| Sbjct 1020371 ATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATA 1020430 Query 118400 TGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 || ||||| | || || | | | || | ||||||||||| ||||| || || || | Sbjct 1020431 AGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCT 1020489 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517 |||| || | |||| | || ||| || || || | || | ||| | Sbjct 1020490 CAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAGAGCG 1020548 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || | || || ||||| || ||||| | ||||| || || || | | ||| Sbjct 1020549 AGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTG 1020608 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || ||||| || | ||| |||||| | | || || || | Sbjct 1020609 TTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACA 1020668 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 || ||||| || | || |||||||| | | ||| | | || | | | |||| Sbjct 1020669 ACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACA 1020728 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 | ||| || || | || |||| || || |||| | ||| || ||| |||| Sbjct 1020729 AAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTAC 1020788 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || | || || ||||| | ||| || || ||||| |||| |||||| || || | Sbjct 1020789 TCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTC 1020848 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || ||| || ||||||||||||||||| | || | || ||||| || |||| || Sbjct 1020849 TTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCT 1020908 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAG--TGGCGTTGGCTCGCCCCTCTTCC 118934 || || | | ||| | | || | |||| | | || | ||| || | ||||| | | Sbjct 1020909 AGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTCCTTC 1020965 Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994 |||||||| || || || || || ||||| || | || | || || || || Sbjct 1020966 TCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GCA 1021024 Query 118995 TT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | ||||| | | || ||| | ||| || |||||| ||||||||||| || Sbjct 1021025 TTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGA 1021082 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || ||||||||||| || ||| || || || || | ||||| | || || || Sbjct 1021083 TCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTC 1021142 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 || | || | || || | || ||| |||||||| || || ||||| | || | Sbjct 1021143 TTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 1021202 Query 119172 GACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 | || | | || ||| |||||| || || || |||||| ||| || || Sbjct 1021203 GCACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACT 1021259 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 119285 |||||||| || |||||||| | ||| || || || || ||| ||| | Sbjct 1021260 CGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTA 1021319 Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345 || | || | ||||| || || || ||||| || ||| ||| || || || || Sbjct 1021320 GCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 1021379 Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405 | | ||| || ||||||| || || || ||| |||| | | | |||||||| Sbjct 1021380 GTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCAT 1021439 Query 119406 CTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| || || || ||||||||||||||||| || || | || ||| | || Sbjct 1021440 GAGGACAGCTGA-GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAA 1021498 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 | | || |||||| || ||| ||||| | ||| ||||| || || | Sbjct 1021499 GAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 1021556 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582 | || | | || ||||||| ||||| || ||| || | | | ||||| ||| Sbjct 1021557 ACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGC 1021616 Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 || |||| || | ||||| ||||||| Sbjct 1021617 TTCAGGAGATATGACCGCTCCAGTGTCTTGA 1021647 >seq35 Length=1329723 Score = 138 bits (152), Expect = 1e-27 Identities = 527/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 994082 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 994141 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || |||| | || | |||| ||| ||||| Sbjct 994142 AAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG-CCAAGAGCGACGAGCAGACG 994200 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||||| |||| || |||||| || | || ||| Sbjct 994201 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACA 994260 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| | | ||| || || || || | ||| | | Sbjct 994261 GGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACG 994320 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||||| ||| | | || || || | || || || | |||| || Sbjct 994321 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 994377 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || ||||||||||| |||||||| || || |||||| ||| || |||||||| Sbjct 994378 GGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAG 994437 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| | |||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 994438 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGAC 994497 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 || || |||| || |||| ||||||||| | | | |||| | | |||||| | Sbjct 994498 GGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCACTTGA 994556 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 994557 TGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGT 994616 Query 130263 TCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321 | | | || | || |||| ||| | || ||||| || || || ||| ||| Sbjct 994617 TGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 994675 Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380 | | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 994676 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 994734 Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | ||| | | ||||| ||||| || ||||| ||||||| || || Sbjct 994735 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 994794 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 |||||| | ||||| | || || | ||||||| || | |||||||||| || Sbjct 994795 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 994854 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| || ||||| | ||| || || ||||| Sbjct 994855 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887 >seq1 Length=3480556 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 179089 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCC 179148 ||||| | ||| | ||||| |||| |||||||||||||| |||| |||| | |||| Sbjct 2613722 CCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCC 2613781 Query 179149 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCC-GC 179207 || |||||||| | | || |||| || ||||| |||||||| | | |||| | Sbjct 2613782 AATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC-AGTCCAGA 2613840 Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 179264 || || | |||| || | | || | | ||||||||| | ||| | | ||| || Sbjct 2613841 GACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTCTCTTGAAACA 2613897 Query 179265 CGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303 || |||| |||||||| ||| |||||| || || || Sbjct 2613898 GGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATC 2613936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434187312360