Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq66 233 2e-56
seq35 138 1e-27
seq1 82.4 9e-11
>seq66
Length=2244893
Score = 233 bits (258), Expect = 2e-56
Identities = 1165/1831 (64%), Gaps = 41/1831 (2%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| || ||| ||| |||| | || ||||||||||| || |||||||| |
Sbjct 1019836 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1019895
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| || | ||||| || | |||| | || ||| | ||||
Sbjct 1019896 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1019955
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||||| ||||| ||||| ||||| || || || || | ||| | | |
Sbjct 1019956 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1020015
Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044
| | ||| ||||| |||||| |||| ||| ||| || || | || || |
Sbjct 1020016 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1020075
Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104
|| || ||||| || || | | | ||| | | ||||||| | | ||||
Sbjct 1020076 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 1020135
Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAACTCAC 118161
|||| ||| | | ||||||| |||| || |||||||| ||||| |
Sbjct 1020136 AGAGGCCAGTATCGACAAGATCCTT---GAGAAGCCAGGGGTTGACAACCTGGAACTCGC 1020192
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || ||| |||| | | ||||| |||| ||||| ||||| ||||| |||||||| |
Sbjct 1020193 CAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGC 1020252
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||| ||| |||| ||| ||| ||||||||||| || | ||| | ||||| || | ||
Sbjct 1020253 CCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATAC 1020312
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCC 118339
| | ||| |||| | |||||||| | |||||| | | || | || | | || |
Sbjct 1020313 CGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCTTGAC 1020370
Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399
| ||||| ||||||||||| || |||| || || || ||||||| |||| ||||||
Sbjct 1020371 ATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATA 1020430
Query 118400 TGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
|| ||||| | || || | | | || | ||||||||||| ||||| || || || |
Sbjct 1020431 AGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCT 1020489
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AA 118517
|||| || | |||| | || ||| || || || | || | ||| |
Sbjct 1020490 CAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAGAGCG 1020548
Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577
| || | || || ||||| || ||||| | ||||| || || || | | |||
Sbjct 1020549 AGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTG 1020608
Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637
|| ||||| || ||||| || | ||| |||||| | | || || || |
Sbjct 1020609 TTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACA 1020668
Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697
|| ||||| || | || |||||||| | | ||| | | || | | | ||||
Sbjct 1020669 ACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACA 1020728
Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757
| ||| || || | || |||| || || |||| | ||| || ||| ||||
Sbjct 1020729 AAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTAC 1020788
Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817
|| | || || ||||| | ||| || || ||||| |||| |||||| || || |
Sbjct 1020789 TCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTC 1020848
Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877
|| ||| || ||||||||||||||||| | || | || ||||| || |||| ||
Sbjct 1020849 TTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCT 1020908
Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAG--TGGCGTTGGCTCGCCCCTCTTCC 118934
|| || | | ||| | | || | |||| | | || | ||| || | ||||| | |
Sbjct 1020909 AGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTCCTTC 1020965
Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994
|||||||| || || || || || ||||| || | || | || || || ||
Sbjct 1020966 TCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGG-GCA 1021024
Query 118995 TT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAAGAGG 119051
|| | ||||| | | || ||| | ||| || |||||| ||||||||||| ||
Sbjct 1021025 TTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAACAGA 1021082
Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111
|| ||||||||||| || ||| || || || || | ||||| | || || ||
Sbjct 1021083 TCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTC 1021142
Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171
|| | || | || || | || ||| |||||||| || || ||||| | || |
Sbjct 1021143 TTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAG 1021202
Query 119172 GACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225
| || | | || ||| |||||| || || || |||||| ||| || ||
Sbjct 1021203 GCACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACT 1021259
Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 119285
|||||||| || |||||||| | ||| || || || || ||| ||| |
Sbjct 1021260 CGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTA 1021319
Query 119286 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 119345
|| | || | ||||| || || || ||||| || ||| ||| || || || ||
Sbjct 1021320 GCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 1021379
Query 119346 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 119405
| | ||| || ||||||| || || || ||| |||| | | | ||||||||
Sbjct 1021380 GTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCAT 1021439
Query 119406 CTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464
|||| ||| || || || ||||||||||||||||| || || | || ||| | ||
Sbjct 1021440 GAGGACAGCTGA-GCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAA 1021498
Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522
| | || |||||| || ||| ||||| | ||| ||||| || || |
Sbjct 1021499 GAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAA 1021556
Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582
| || | | || ||||||| ||||| || ||| || | | | ||||| |||
Sbjct 1021557 ACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGC 1021616
Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
|| |||| || | ||||| |||||||
Sbjct 1021617 TTCAGGAGATATGACCGCTCCAGTGTCTTGA 1021647
>seq35
Length=1329723
Score = 138 bits (152), Expect = 1e-27
Identities = 527/813 (65%), Gaps = 17/813 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || ||||||||||||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 994082 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 994141
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || |||| | || | |||| ||| |||||
Sbjct 994142 AAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG-CCAAGAGCGACGAGCAGACG 994200
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | || |||||||||||| |||| || |||||| || | || |||
Sbjct 994201 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACA 994260
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||| || || | |||| | | ||| || || || || | ||| | |
Sbjct 994261 GGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACG 994320
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA---AGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| ||||| ||| | | || || || | || || || | |||| ||
Sbjct 994321 GATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGG--CAAG-CAAAGTC 994377
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| || ||||||||||| |||||||| || || |||||| ||| || ||||||||
Sbjct 994378 GGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAG 994437
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| | |||||| | |||||| || | ||| | || ||||||||| ||||| ||
Sbjct 994438 ACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGAC 994497
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202
|| || |||| || |||| ||||||||| | | | |||| | | |||||| |
Sbjct 994498 GGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGATCCACTTGA 994556
Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262
| ||||| | ||||| || ||| || || | ||||| || || | ||||| | |
Sbjct 994557 TGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGT 994616
Query 130263 TCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321
| | | || | || |||| ||| | || ||||| || || || ||| |||
Sbjct 994617 TGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 994675
Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380
| | | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 994676 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 994734
Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440
| ||| | | ||||| ||||| || ||||| ||||||| || ||
Sbjct 994735 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 994794
Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497
|||||| | ||||| | || || | ||||||| || | |||||||||| ||
Sbjct 994795 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 994854
Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||| || ||||| | ||| || || |||||
Sbjct 994855 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887
>seq1
Length=3480556
Score = 82.4 bits (90), Expect = 9e-11
Identities = 152/219 (69%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 179089 CCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCC 179148
||||| | ||| | ||||| |||| |||||||||||||| |||| |||| | ||||
Sbjct 2613722 CCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCC 2613781
Query 179149 AACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCC-GC 179207
|| |||||||| | | || |||| || ||||| |||||||| | | |||| |
Sbjct 2613782 AATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC-AGTCCAGA 2613840
Query 179208 CACATATGCCGCCAACTGCGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCA 179264
|| || | |||| || | | || | | ||||||||| | ||| | | ||| ||
Sbjct 2613841 GACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTCTCTTGAAACA 2613897
Query 179265 CGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTC 179303
|| |||| |||||||| ||| |||||| || || ||
Sbjct 2613898 GGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATC 2613936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434187312360
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