Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq66 302 5e-77 seq35 149 7e-31 seq43 120 4e-22 seq1 86.0 7e-12 >seq66 Length=2244893 Score = 302 bits (334), Expect = 5e-77 Identities = 980/1497 (65%), Gaps = 35/1497 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| ||||| | || || || || ||||||| |||| Sbjct 1021591 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1021532 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| || | | || | || || | || ||||||| Sbjct 1021531 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1021474 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| ||| | | || ||||| |||||||| | | || ||||| | Sbjct 1021473 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1021414 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | ||||| | | ||||| || || ||| ||||| Sbjct 1021413 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1021354 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | | || | ||| ||| || || | Sbjct 1021353 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1021294 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 1021293 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1021234 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | ||| | | | | || | | || |||| || ||||| |||||| Sbjct 1021233 TCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1021175 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| || | ||||||||||| | || ||||| || | || |||| || | Sbjct 1021174 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCC 1021115 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA-- 104753 || || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| Sbjct 1021114 CGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAAC 1021055 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 ||| | ||| || | | || || || || || ||||| || | || ||| | || Sbjct 1021054 TTGG--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTAT-GG 1020999 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || || || || || || || |||||||| |||| ||| | | | | || ||| Sbjct 1020998 CGAAGAATTCGAGGCTCTGTATGAGAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACT 1020941 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | |||| | || | ||||| | | || || || | || || |||||||||| || Sbjct 1020940 ATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCC 1020882 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||||||||||| || ||||| |||| ||||| || || ||||| |||| || Sbjct 1020881 CTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCAT 1020822 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| ||||| || || ||| | || | | | | || ||| ||||| Sbjct 1020821 CCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGT 1020762 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106 || ||| | || || | |||||||| | ||| || | | | || ||| | | | Sbjct 1020761 CTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTAT 1020704 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | | || || ||||| ||||| || || | ||||| ||| | | || Sbjct 1020703 GACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATC 1020644 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || | ||||||||| || ||||| || ||| | | ||||| || ||| Sbjct 1020643 GATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATT 1020584 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTC 105285 ||| | |||||||||||||| || || | ||| | || || || | | || || || Sbjct 1020583 GGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATC 1020525 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 |||||| || | || || || ||||||||||| || ||||| || || || Sbjct 1020524 ACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGA 1020465 Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 ||| | ||| | || || | || ||||| ||||| | || |||| || || || Sbjct 1020464 GGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGC 1020405 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 105465 || |||| | || || ||||| ||||||| | || ||| | | || || Sbjct 1020404 CTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTG 1020345 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 ||| | |||||||| | || |||||| | ||| |||| |||||| | ||| | || || Sbjct 1020344 GGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCC 1020285 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || ||| ||| | || ||| |||| || ||||||||||| || |||||||| Sbjct 1020284 CATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACAC 1020225 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCA 105642 | |||||||| | | || | ||| || || ||||| | ||||||| | || Sbjct 1020224 CTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCT 1020165 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699 |||| |||| || || | ||| ||||||||| | | ||||||| | | ||| Sbjct 1020164 TCTCAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 1020111 >seq35 Length=1329723 Score = 149 bits (164), Expect = 7e-31 Identities = 353/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 994887 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 994828 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 994827 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 994768 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 994767 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 994709 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 994708 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 994650 Query 94676 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 94733 | |||| || | ||||| | | | || || | ||||| | ||||| | || Sbjct 994649 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 994592 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || || | ||||| || || ||||| || |||||| | | |||| | | | Sbjct 994591 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 994532 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 994531 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 994473 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 994472 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 994413 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 994412 ACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGC 994370 >seq43 Length=1687706 Score = 120 bits (132), Expect = 4e-22 Identities = 281/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || ||||| | ||||| | ||| | || |||| | ||||| || |||| Sbjct 759617 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 759558 Query 9587 ATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||||| | |||||| || | | | || || ||||| ||||| | || ||||||| Sbjct 759557 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 759500 Query 9645 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 9700 || || ||||||||||| ||| | || ||| || || || || || | Sbjct 759499 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 759445 Query 9701 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||||| ||| || || |||||||||| |||||| || || | || | | Sbjct 759444 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 759385 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||| || || ||||| || | ||||| |||||||||||||||||||| | | Sbjct 759384 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 759325 Query 9814 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 || || | | ||| ||||| ||| || || ||| | || ||||||||||| Sbjct 759324 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 759266 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||| || || || || ||| | ||| | ||| ||||| ||||||||||| || Sbjct 759265 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 759211 >seq1 Length=3480556 Score = 86.0 bits (94), Expect = 7e-12 Identities = 198/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 || || | |||||| | ||| | ||||| || | |||||||||||||| |||| || Sbjct 2613713 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 2613772 Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592 || | ||||| |||||||| | | || |||| || ||||||||||| ||| || Sbjct 2613773 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 2613832 Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 168648 | | ||| | | |||| || | | |||| | |||||||||| | ||| | Sbjct 2613833 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 2613888 Query 168649 GTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 168708 | ||| || ||||||| ||||| ||||| |||||| || ||||| ||| | Sbjct 2613889 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 2613948 Query 168709 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 168764 || || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 2613949 AATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 2614004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259844910440