Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq66 302 5e-77
seq35 149 7e-31
seq43 120 4e-22
seq1 86.0 7e-12
>seq66
Length=2244893
Score = 302 bits (334), Expect = 5e-77
Identities = 980/1497 (65%), Gaps = 35/1497 (2%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| | ||||| ||||| | || || || || ||||||| ||||
Sbjct 1021591 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1021532
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339
| ||||||||| || |||||| || | | || | || || | || |||||||
Sbjct 1021531 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1021474
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| ||| | | || ||||| |||||||| | | || ||||| |
Sbjct 1021473 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1021414
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| || | |||||||| | ||||| | | ||||| || || ||| |||||
Sbjct 1021413 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1021354
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| ||||| || || || |||| | | | || | ||| ||| || || |
Sbjct 1021353 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1021294
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| ||| || | ||||| || || |||||||| || || ||| ||| || | || |
Sbjct 1021293 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1021234
Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635
| | || | ||| | | | | || | | || |||| || ||||| ||||||
Sbjct 1021233 TCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1021175
Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695
|| ||| || | ||||||||||| | || ||||| || | || |||| || |
Sbjct 1021174 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCC 1021115
Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA-- 104753
|| || || ||| |||||||||||| || ||||| ||||||||| | |||||| |||
Sbjct 1021114 CGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAAC 1021055
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811
||| | ||| || | | || || || || || ||||| || | || ||| | ||
Sbjct 1021054 TTGG--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTAT-GG 1020999
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869
|| || || || || || || |||||||| |||| ||| | | | | || |||
Sbjct 1020998 CGAAGAATTCGAGGCTCTGTATGAGAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACT 1020941
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| | |||| | || | ||||| | | || || || | || || |||||||||| ||
Sbjct 1020940 ATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCC 1020882
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| ||||||||||| || ||||| |||| ||||| || || ||||| |||| ||
Sbjct 1020881 CTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCAT 1020822
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || ||||| ||||| || || ||| | || | | | | || ||| |||||
Sbjct 1020821 CCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGT 1020762
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATTT 105106
|| ||| | || || | |||||||| | ||| || | | | || ||| | | |
Sbjct 1020761 CTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTAT 1020704
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | | || || ||||| ||||| || || | ||||| ||| | | ||
Sbjct 1020703 GACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATC 1020644
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || | ||||||||| || ||||| || ||| | | ||||| || |||
Sbjct 1020643 GATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATT 1020584
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTC 105285
||| | |||||||||||||| || || | ||| | || || || | | || || ||
Sbjct 1020583 GGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATC 1020525
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
|||||| || | || || || ||||||||||| || ||||| || || ||
Sbjct 1020524 ACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGA 1020465
Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405
||| | ||| | || || | || ||||| ||||| | || |||| || || ||
Sbjct 1020464 GGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGC 1020405
Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 105465
|| |||| | || || ||||| ||||||| | || ||| | | || ||
Sbjct 1020404 CTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTG 1020345
Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525
||| | |||||||| | || |||||| | ||| |||| |||||| | ||| | || ||
Sbjct 1020344 GGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCC 1020285
Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585
||||| || ||| ||| | || ||| |||| || ||||||||||| || ||||||||
Sbjct 1020284 CATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACAC 1020225
Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCA 105642
| |||||||| | | || | ||| || || ||||| | ||||||| | ||
Sbjct 1020224 CTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCT 1020165
Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699
|||| |||| || || | ||| ||||||||| | | ||||||| | | |||
Sbjct 1020164 TCTCAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 1020111
>seq35
Length=1329723
Score = 149 bits (164), Expect = 7e-31
Identities = 353/523 (67%), Gaps = 13/523 (2%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || |||||| | ||||| || |||||| || |||| ||||| | | | ||
Sbjct 994887 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 994828
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| | || ||| | ||||| |||||||||| |||||||||| ||||| || |||
Sbjct 994827 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 994768
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616
|| ||||| | | || | ||||| || |||| | || || |||
Sbjct 994767 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 994709
Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|||||| | | ||| |||| ||| | | | || ||||| ||| ||||
Sbjct 994708 CTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 994650
Query 94676 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 94733
| |||| || | ||||| | | | || || | ||||| | ||||| | ||
Sbjct 994649 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 994592
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||| || || | ||||| || || ||||| || |||||| | | |||| | | |
Sbjct 994591 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 994532
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
|||||||||| |||| || | || ||||| || ||||||||||||||| ||
Sbjct 994531 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 994473
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
|||| | | || | |||||||||||| ||||||||||||| || || ||||||||
Sbjct 994472 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 994413
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 994412 ACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGC 994370
>seq43
Length=1687706
Score = 120 bits (132), Expect = 4e-22
Identities = 281/415 (68%), Gaps = 22/415 (5%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || ||||| | ||||| | ||| | || |||| | ||||| || ||||
Sbjct 759617 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 759558
Query 9587 ATGACAACAATACCTGTT-TC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
| |||||| | |||||| || | | | || || ||||| ||||| | || |||||||
Sbjct 759557 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 759500
Query 9645 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 9700
|| || ||||||||||| ||| | || ||| || || || || || |
Sbjct 759499 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 759445
Query 9701 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753
||||| ||| || || |||||||||| |||||| || || | || | |
Sbjct 759444 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 759385
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
|||| || || ||||| || | ||||| |||||||||||||||||||| | |
Sbjct 759384 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 759325
Query 9814 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
|| || | | ||| ||||| ||| || || ||| | || |||||||||||
Sbjct 759324 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 759266
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|||| || || || || ||| | ||| | ||| ||||| ||||||||||| ||
Sbjct 759265 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 759211
>seq1
Length=3480556
Score = 86.0 bits (94), Expect = 7e-12
Identities = 198/296 (67%), Gaps = 8/296 (3%)
Strand=Plus/Plus
Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532
|| || | |||||| | ||| | ||||| || | |||||||||||||| |||| ||
Sbjct 2613713 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 2613772
Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592
|| | ||||| |||||||| | | || |||| || ||||||||||| ||| ||
Sbjct 2613773 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 2613832
Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 168648
| | ||| | | |||| || | | |||| | |||||||||| | ||| |
Sbjct 2613833 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 2613888
Query 168649 GTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 168708
| ||| || ||||||| ||||| ||||| |||||| || ||||| ||| |
Sbjct 2613889 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 2613948
Query 168709 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 168764
|| || | | ||||||| |||||| | ||| ||||||| |||||||
Sbjct 2613949 AATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 2614004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259844910440
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