Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq44 129 2e-24 seq2 125 2e-23 seq121 113 1e-19 >seq44 Length=3047126 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 758539 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 758598 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 758599 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 758658 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | || || | || Sbjct 758659 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTC 758718 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 758719 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || |||||||| || || || || ||||| Sbjct 758259 CATACCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATC 758318 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 758319 GCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGG 758378 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || ||||| | ||| |||| || Sbjct 758379 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTC 758438 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| ||||| || || || || Sbjct 758439 CACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGAC 758477 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || Sbjct 1396967 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 1396908 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| | || ||||| || || || Sbjct 1396907 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGG 1396848 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 1396847 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1396788 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 1396787 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 >seq2 Length=1230088 Score = 125 bits (138), Expect = 2e-23 Identities = 473/731 (65%), Gaps = 12/731 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG-TGTAGA 349263 || ||||| | |||||||| || ||||| || | | | | | | || || ||| || Sbjct 959660 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 959718 Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323 || ||||| || || || |||||| |||| || || || | |||||| || ||||| || Sbjct 959719 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 959778 Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGT 349383 |||||| ||||||||||| | || || || || | || || || | || || || Sbjct 959779 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 959838 Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGAT 349441 || || || |||||| | |||||| | | || | || | | | || |||| Sbjct 959839 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCCGAGGTTCAGG--CTGAC 959896 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | |||| | | ||| || || || | | ||||| Sbjct 959897 ATGAAGCACTTCCCCTTCAAGATTGT-CGACAAG--GGCTCCAAGCCCGTCGTCGAGGTC 959953 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 || | || || || || || | | || ||||| || || || || ||| | | Sbjct 959954 GAGTTCAAGGGCGAGACCAAGA-ACTTCACTCCCGAGGAGATCTCCTCCATGATCCTGAC 960012 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | || || || || | || || || | | || || | || Sbjct 960013 CAAGATGCGTGAGACCGCCGAGGCCTACCTGGGCACCACCGTCAACAACGCCGTCGTCAC 960072 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 ||| || ||||| || || || ||||||| || || || || || || |||||| Sbjct 960073 TGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGC 960132 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || ||||| ||||| || ||||| || || || Sbjct 960133 CGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCT 960192 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| || | | || || || | || || || ||| | || ||||||||||| Sbjct 960193 TGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGTGGTACTTT 960252 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || || || || |||| ||||| || || || || || | ||||| ||||| Sbjct 960253 CGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 960312 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || | ||||| || ||||| || || ||||| || || ||||| || || || Sbjct 960313 CACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTTGTCAACGAGTT 960372 Query 349921 TAAGCGTCAAG 349931 ||||| |||| Sbjct 960373 CAAGCG-CAAG 960382 >seq121 Length=402543 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| |||| || ||| || || | ||||||||||| ||||||||||| Sbjct 146768 CGAGGCACACCAAGTGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAAGTATTC 146824 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||| |||||||| ||||| || |||| ||| ||||||||||| Sbjct 146825 AGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGAACACCAACCATTTCA 146884 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 146885 CCAGGGTTGACAA 146897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251856740193