Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq66 255 6e-63
seq1 107 2e-18
>seq66
Length=2244893
Score = 255 bits (282), Expect = 6e-63
Identities = 374/527 (71%), Gaps = 4/527 (1%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
|||||||| |||||| ||| || | ||| | || | |||||| || ||| | || ||
Sbjct 1021538 GCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCCTCTCCCAC 1021479
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
||| |||||||||||||| || ||||| |||| ||||||||||||| |||||
Sbjct 1021478 CCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAA 1021419
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||| ||| || || || |||||||| || || ||| |||||| || ||||||
Sbjct 1021418 GGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGAT 1021359
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470
| | ||||||||||| | || || | ||| |||||| | ||| | ||
Sbjct 1021358 GGCTGGTGGTATCGGCCTGAACG--TCCACCGTATCCGTGCTACGGGCTCTTACATTGCC 1021301
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || ||||| | || | || ||| | || ||||| || |||||||||||||| |||
Sbjct 1021300 GGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCC 1021241
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
| |||||| |||||||||| |||||| || | || |||||||||||||||||
Sbjct 1021240 AGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCT 1021181
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||||||||| | | ||||| || || || || ||| || || | |||||| |
Sbjct 1021180 TGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTC 1021121
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
|| |||||||||||| ||||| ||||| || || || |||||| | || |||
Sbjct 1021120 CGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAG 1021061
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
||| || ||| ||| |||||||||| ||||| ||||| |||||
Sbjct 1021060 AAGAACTTGGACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCT 1021014
Score = 93.3 bits (102), Expect = 5e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
|| || |||||||| | ||| || ||||||||||| |||||||| |||| || ||||
Sbjct 1020001 GCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTGAACATCCACATGAAGGATCCC 1019942
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
|| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 1019941 ACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACTGGC 1019882
Query 55907 ATGTACTATCTGCGGACCC 55925
|||||||| ||||| ||||
Sbjct 1019881 ATGTACTACCTGCGTACCC 1019863
>seq1
Length=3480556
Score = 107 bits (118), Expect = 2e-18
Identities = 194/282 (69%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||| | || || || || || ||||||| || |||| |||| ||| |||||||| |
Sbjct 2613657 ACGGGGACAGTCGCGTAAAGATATAACGAGGACTAGCAGAATCCGAGCCGCCAGCAAGTC 2613716
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
| | ||| || | || || ||||| | || ||| | ||||| | ||||||||||| ||
Sbjct 2613717 GAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTT 2613776
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| ||||| |||||||| || || || || ||||| || || ||| |
Sbjct 2613777 GGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTCAGTC 2613836
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCAC--CTTCATGTCTGACGTCAGGTTCTTCTTGAG 117528
| | ||||| || ||||||| | || ||||| |||| || ||| ||||||
Sbjct 2613837 CAGAGACGTAACCAGCCAGCTCCACAACTTTTTCATCCTTGAC--CACGTTTCTCTTGAA 2613894
Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
||||| || | |||||| || |||| |||||||| |||||
Sbjct 2613895 ACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATC 2613936
Score = 91.5 bits (100), Expect = 2e-13
Identities = 173/252 (69%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
||||| ||||| || || | || || | |||| ||| || || || || | |||||
Sbjct 2613668 CGCGTAAAGATATAACGAGGACTAGCAGAATCCGAGCCGCCAGCAAGTCGAGAACCAAAG 2613727
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| || ||||||||||| ||||| ||||| | |||||| || | || |||||
Sbjct 2613728 TTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCCAATCCA 2613787
Query 152146 ACAATCGTGCCCTGCAGACTCGCT-TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204
|||||||| |||||| | | | || |||||||| || || ||| | | | || |||
Sbjct 2613788 ACAATCGTCTGCTGCAG-CGAGATGTCGCCGTGGTGGTAAGCAGTCAGTCCAGAGACGTA 2613846
Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264
|| |||| || | | || || ||| | || ||| |||||| ||||||||| |
Sbjct 2613847 ACCAGCCAGCTCCACAACTTTTTCATCCTTGACCACGTTTCTCTTGAAACAGGCGTACAG 2613906
Query 152265 CACCTTGCGCTG 152276
|||||| || ||
Sbjct 2613907 CACCTTTCGTTG 2613918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215103933800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |