Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq66 255 6e-63 seq1 107 2e-18 >seq66 Length=2244893 Score = 255 bits (282), Expect = 6e-63 Identities = 374/527 (71%), Gaps = 4/527 (1%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||||||| |||||| ||| || | ||| | || | |||||| || ||| | || || Sbjct 1021538 GCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCCTCTCCCAC 1021479 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| || ||||| |||| ||||||||||||| ||||| Sbjct 1021478 CCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAA 1021419 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || || || |||||||| || || ||| |||||| || |||||| Sbjct 1021418 GGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGAT 1021359 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | ||||||||||| | || || | ||| |||||| | ||| | || Sbjct 1021358 GGCTGGTGGTATCGGCCTGAACG--TCCACCGTATCCGTGCTACGGGCTCTTACATTGCC 1021301 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| | || | || ||| | || ||||| || |||||||||||||| ||| Sbjct 1021300 GGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCC 1021241 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | |||||| |||||||||| |||||| || | || ||||||||||||||||| Sbjct 1021240 AGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCT 1021181 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | ||||| || || || || ||| || || | |||||| | Sbjct 1021180 TGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTC 1021121 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 || |||||||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 1021120 CGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAG 1021061 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| || ||| ||| |||||||||| ||||| ||||| ||||| Sbjct 1021060 AAGAACTTGGACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCT 1021014 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | ||| || ||||||||||| |||||||| |||| || |||| Sbjct 1020001 GCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTGAACATCCACATGAAGGATCCC 1019942 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 1019941 ACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACTGGC 1019882 Query 55907 ATGTACTATCTGCGGACCC 55925 |||||||| ||||| |||| Sbjct 1019881 ATGTACTACCTGCGTACCC 1019863 >seq1 Length=3480556 Score = 107 bits (118), Expect = 2e-18 Identities = 194/282 (69%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | || || || || || ||||||| || |||| |||| ||| |||||||| | Sbjct 2613657 ACGGGGACAGTCGCGTAAAGATATAACGAGGACTAGCAGAATCCGAGCCGCCAGCAAGTC 2613716 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | ||| || | || || ||||| | || ||| | ||||| | ||||||||||| || Sbjct 2613717 GAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTT 2613776 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | ||||| |||||||| || || || || ||||| || || ||| | Sbjct 2613777 GGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTCAGTC 2613836 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCAC--CTTCATGTCTGACGTCAGGTTCTTCTTGAG 117528 | | ||||| || ||||||| | || ||||| |||| || ||| |||||| Sbjct 2613837 CAGAGACGTAACCAGCCAGCTCCACAACTTTTTCATCCTTGAC--CACGTTTCTCTTGAA 2613894 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| || | |||||| || |||| |||||||| ||||| Sbjct 2613895 ACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATC 2613936 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 ||||| ||||| || || | || || | |||| ||| || || || || | ||||| Sbjct 2613668 CGCGTAAAGATATAACGAGGACTAGCAGAATCCGAGCCGCCAGCAAGTCGAGAACCAAAG 2613727 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||||||||| ||||| ||||| | |||||| || | || ||||| Sbjct 2613728 TTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAGTCTTGGGCCAATCCA 2613787 Query 152146 ACAATCGTGCCCTGCAGACTCGCT-TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 |||||||| |||||| | | | || |||||||| || || ||| | | | || ||| Sbjct 2613788 ACAATCGTCTGCTGCAG-CGAGATGTCGCCGTGGTGGTAAGCAGTCAGTCCAGAGACGTA 2613846 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 || |||| || | | || || ||| | || ||| |||||| ||||||||| | Sbjct 2613847 ACCAGCCAGCTCCACAACTTTTTCATCCTTGACCACGTTTCTCTTGAAACAGGCGTACAG 2613906 Query 152265 CACCTTGCGCTG 152276 |||||| || || Sbjct 2613907 CACCTTTCGTTG 2613918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215103933800