Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq66 291 9e-74 seq44 185 1e-41 seq42 120 3e-22 seq1 100 3e-16 >seq66 Length=2244893 Score = 291 bits (322), Expect = 9e-74 Identities = 1128/1751 (64%), Gaps = 51/1751 (3%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| |||||||| || ||||||||| | |||| Sbjct 1019859 GCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 1019918 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||| | || |||| |||||||| ||||| |||||| Sbjct 1019919 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGA 1019978 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 |||||||| ||||| || || | ||| | | || || | | | | || ||||| Sbjct 1019979 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGGCGCT-GAGAGATCTCCCA 1020037 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | || | ||||||| || | | | | Sbjct 1020038 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 1020094 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || |||| | || |||| || | ||||| ||| | | || Sbjct 1020095 ACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAG 1020154 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| || | || |||| || || ||| || ||| | Sbjct 1020155 ATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCGCTG 1020211 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 1020212 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCT 1020271 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| |||| | || || || | ||||||| ||| || | ||| Sbjct 1020272 GGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTC 1020331 Query 80502 ---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553 | || | || || || | ||| ||| |||| |||||| ||| | Sbjct 1020332 CTTGAGCGAGTCCCACTCCCACAGGTCAGTGG----GCT-TGACATCCCACAAGTCAAAC 1020386 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||||| || || || || || ||| ||| | ||| || || ||||| ||||| Sbjct 1020387 TGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTG 1020446 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 || | ||| || || ||||| ||||| || ||| |||||||| ||||||| Sbjct 1020447 GCAATCTCCATAGATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTC 1020506 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | |||| || | || ||||| | | | || | ||| ||||||| || Sbjct 1020507 AACTCGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGA 1020566 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792 |||||||| || | | || || |||||||| |||| | | || | ||||| ||| Sbjct 1020567 CCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG-CCTCCTGAAC 1020625 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| |||| |||||||| |||||| ||||| || ||| ||| |||||||| Sbjct 1020626 GGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATC 1020685 Query 80853 ATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 ||||| |||| |||||| | || ||| | ||||| || || || || Sbjct 1020686 GTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAA 1020745 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| |||| | | |||| ||||| || ||||| Sbjct 1020746 AGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCA 1020805 Query 80967 CAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 | || || ||| || || |||||||| |||||||| |||| |||||| || Sbjct 1020806 GAGGTTGGAG--CTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 1020863 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 |||||||| ||| | ||| |||| ||||| ||| | || ||||||| || ||| Sbjct 1020864 TCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCAC 1020923 Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144 | || | || || |||||| ||||| || | | ||||| | || Sbjct 1020924 AGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGA 1020983 Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203 | ||||| | | || | | ||| ||| ||| | ||||| ||||| |||||||||| Sbjct 1020984 GCCTCGAATTCTTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCGTTGGGGCACATCAA 1021042 Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263 |||||| || ||||| ||| ||||||||| |||||||||||||| ||| Sbjct 1021043 AGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAG 1021102 Query 81264 GAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 ||||||||| ||| || |||| || | || ||||| ||| | || || || || Sbjct 1021103 GAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTC 1021162 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380 | || || || ||||| ||||| || || | ||| | | || ||| ||| Sbjct 1021163 AAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCC 1021222 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 |||||||| |||||| | |||||| ||| || || || | ||| ||||||||||| | Sbjct 1021223 ACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTT 1021282 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || |||||| || || | || || ||| | || || | | || || Sbjct 1021283 GGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAG 1021342 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 ||||| ||||| | | ||| |||||| ||||| || | || || || || || Sbjct 1021343 GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACC 1021402 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 ||| ||||| || | |||||||| | || ||| || |||| |||| |||| | | Sbjct 1021403 CTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA--GCTTGTGGG 1021460 Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || || ||||| || || || | || || | || | | | ||||| |||| Sbjct 1021461 GTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGG 1021520 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 || || || ||| || ||| | ||| || || || | ||| |||||||||| | Sbjct 1021521 TATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATC 1021580 Query 81739 ATGTACTGGGG 81749 |||| ||| || Sbjct 1021581 ATGTGCTGTGG 1021591 >seq44 Length=3047126 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | || || |||||||||||||| |||||||| |||||| Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| |||||||||||||||| || || || | ||||| || Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 758543 Score = 176 bits (194), Expect = 5e-39 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || || ||||| |||||| |||| ||||| Sbjct 758477 GTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTGAC 758418 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 758417 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 758358 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 |||||||||||||| || ||||| | ||| ||||| ||| || || || |||| ||||| Sbjct 758357 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGC-GATTACAACATCCAGAAGGA 758299 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | |||||||| ||||| Sbjct 758298 GTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGG 758263 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 1396740 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1396799 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 1396800 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1396859 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| |||||||||| || ||||| ||| ||||| || Sbjct 1396860 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 1396918 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 1396919 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1396966 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || || || |||||| | Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 758201 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 758142 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || ||||||||||| || || || | ||| ||||| ||| ||||| || Sbjct 758141 CAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 758083 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| | || || || ||||| || Sbjct 758082 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCCA 758032 >seq42 Length=797865 Score = 120 bits (132), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||| ||| || || ||||| || || |||||||| || || |||||||| ||||| Sbjct 706195 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 706136 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || || ||||||||||||||||| || || || Sbjct 706135 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAT 706076 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || ||||| ||||| |||||||||| || ||||| | ||||| Sbjct 706075 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTAC 706016 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 706015 AACATCCAGAAGG 706003 >seq1 Length=3480556 Score = 100 bits (110), Expect = 3e-16 Identities = 231/331 (70%), Gaps = 14/331 (4%) Strand=Plus/Minus Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGC-ACGAGTGCACGCTTATTATTACCGAGGG 31277 || ||||||| ||| || ||| | || || ||||||||||||| || | || || || Sbjct 2614746 GAAGCCAACTTGGCGGGAACC-AGGCGTGGCCACGAGTGCACGCTAATCTTGACTGAAGG 2614688 Query 31278 TGACTCGGC-AAAGGCGCTTGCTATTGCTGGCTTGAGTG-TTGTGGGGCGCAATGCGT-T 31334 ||||| || |||||| || ||| || |||| ||| || | | | | | ||| | Sbjct 2614687 AGACTCTGCCAAAGGC-CTGGCTGTTTCTGGAC-GAGCCATTCTTGATCCCGAC-CGTAT 2614631 Query 31335 CGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGT 31394 ||| ||||| || || || || || | || |||||||| ||||| ||| || | || | Sbjct 2614630 CGGCGTGTTCCCACTTCGCGGTAAACTGCTAAACGTTCGAGACGCTTCCATTGACCAAAT 2614571 Query 31395 TACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG-GCA-AG 31452 || | || ||||| || ||| | || || |||| || || |||| ||| | Sbjct 2614570 CACCAAAAACCAAGAGATTCAAAACATCAAGCAGTTCCTGGGTCTCAAGCACAAGCAGAC 2614511 Query 31453 GTATA-TAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGA 31511 ||| | | || || ||| | ||||| ||||||| ||||||||| ||| |||| || Sbjct 2614510 GTACACTGAT--ACGAAGA-ACTTGCGTTACGGTCACCTCATGATCATGGCCGATCAGGA 2614454 Query 31512 TCTCGACGGCAGTCACATCAAGGGTCTTGTC 31542 || |||||| ||||| |||||||||||| || Sbjct 2614453 TCACGACGGTAGTCATATCAAGGGTCTTCTC 2614423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309466116720