Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq66 291 9e-74
seq44 185 1e-41
seq42 120 3e-22
seq1 100 3e-16
>seq66
Length=2244893
Score = 291 bits (322), Expect = 9e-74
Identities = 1128/1751 (64%), Gaps = 51/1751 (3%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 1019859 GCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 1019918
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| | | ||| | | |||||| | || |||| |||||||| ||||| ||||||
Sbjct 1019919 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGA 1019978
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
|||||||| ||||| || || | ||| | | || || | | | | || |||||
Sbjct 1019979 TCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGGCGCT-GAGAGATCTCCCA 1020037
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| || | || | ||||||| || | | | |
Sbjct 1020038 AACAGTCTTGTACAGGGCCTT--GATG-TCGGCGGGAATGTTGGGAATGTTCTGGATAGA 1020094
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || |||| | || |||| || | ||||| ||| | | ||
Sbjct 1020095 ACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAG 1020154
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| || | ||| | | ||| || | || |||| || || ||| || ||| |
Sbjct 1020155 ATCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCAGCAAGGACACGTCGCTG 1020211
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || || ||||| || |||||||| | |||||
Sbjct 1020212 GTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCT 1020271
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| ||| |||| | || || || | ||||||| ||| || | |||
Sbjct 1020272 GGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTC 1020331
Query 80502 ---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553
| || | || || || | ||| ||| |||| |||||| ||| |
Sbjct 1020332 CTTGAGCGAGTCCCACTCCCACAGGTCAGTGG----GCT-TGACATCCCACAAGTCAAAC 1020386
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||||| || || || || || ||| ||| | ||| || || ||||| |||||
Sbjct 1020387 TGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTG 1020446
Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
|| | ||| || || ||||| ||||| || ||| |||||||| |||||||
Sbjct 1020447 GCAATCTCCATAGATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTC 1020506
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| |||| || | || ||||| | | | || | ||| ||||||| ||
Sbjct 1020507 AACTCGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGA 1020566
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAAT 80792
|||||||| || | | || || |||||||| |||| | | || | ||||| |||
Sbjct 1020567 CCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG-CCTCCTGAAC 1020625
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| |||| |||||||| |||||| ||||| || ||| ||| ||||||||
Sbjct 1020626 GGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATC 1020685
Query 80853 ATGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906
||||| |||| |||||| | || ||| | ||||| || || || ||
Sbjct 1020686 GTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAA 1020745
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|| |||| ||||| || || ||||| |||| | | |||| ||||| || |||||
Sbjct 1020746 AGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCA 1020805
Query 80967 CAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
| || || ||| || || |||||||| |||||||| |||| |||||| ||
Sbjct 1020806 GAGGTTGGAG--CTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 1020863
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084
|||||||| ||| | ||| |||| ||||| ||| | || ||||||| || |||
Sbjct 1020864 TCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCAC 1020923
Query 81085 ATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCT 81144
| || | || || |||||| ||||| || | | ||||| | ||
Sbjct 1020924 AGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGA 1020983
Query 81145 TCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG 81203
| ||||| | | || | | ||| ||| ||| | ||||| ||||| ||||||||||
Sbjct 1020984 GCCTCGAATTCTTCGCCATAGCAGT-CAGCAAGGCCAGGGCATTCGTTGGGGCACATCAA 1021042
Query 81204 GTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGT 81263
|||||| || ||||| ||| ||||||||| |||||||||||||| |||
Sbjct 1021043 AGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAG 1021102
Query 81264 GAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323
||||||||| ||| || |||| || | || ||||| ||| | || || || ||
Sbjct 1021103 GAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTC 1021162
Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380
| || || || ||||| ||||| || || | ||| | | || ||| |||
Sbjct 1021163 AAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCC 1021222
Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440
|||||||| |||||| | |||||| ||| || || || | ||| ||||||||||| |
Sbjct 1021223 ACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTT 1021282
Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500
|| |||||| || || | || || ||| | || || | | || ||
Sbjct 1021283 GGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAG 1021342
Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560
||||| ||||| | | ||| |||||| ||||| || | || || || || ||
Sbjct 1021343 GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACC 1021402
Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620
||| ||||| || | |||||||| | || ||| || |||| |||| |||| | |
Sbjct 1021403 CTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGA--GCTTGTGGG 1021460
Query 81621 G--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678
| || || ||||| || || || | || || | || | | | ||||| ||||
Sbjct 1021461 GTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGG 1021520
Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738
|| || || ||| || ||| | ||| || || || | ||| |||||||||| |
Sbjct 1021521 TATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATC 1021580
Query 81739 ATGTACTGGGG 81749
|||| ||| ||
Sbjct 1021581 ATGTGCTGTGG 1021591
>seq44
Length=3047126
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| ||||| | || || |||||||||||||| |||||||| ||||||
Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| |||||||||||||||| || || || | ||||| ||
Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 758543
Score = 176 bits (194), Expect = 5e-39
Identities = 170/216 (79%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || || || ||||| |||||| |||| |||||
Sbjct 758477 GTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTGAC 758418
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 758417 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 758358
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|||||||||||||| || ||||| | ||| ||||| ||| || || || |||| |||||
Sbjct 758357 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGC-GATTACAACATCCAGAAGGA 758299
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || || ||| | |||||||| |||||
Sbjct 758298 GTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGG 758263
Score = 165 bits (182), Expect = 9e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 1396740 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1396799
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| ||||| || ||||||
Sbjct 1396800 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1396859
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || |||||||||||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 1396860 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 1396918
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 1396919 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1396966
Score = 158 bits (174), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||||||||| || || || || || |||||| |
Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || ||||||||||||||||| || || || ||||||
Sbjct 758201 GATACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 758142
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || || ||||||||||| || || || | ||| ||||| ||| ||||| ||
Sbjct 758141 CAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 758083
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| ||| || || | ||| | || || || ||||| ||
Sbjct 758082 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCCA 758032
>seq42
Length=797865
Score = 120 bits (132), Expect = 3e-22
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 27405 AATGC--AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
||||| ||| || || ||||| || || |||||||| || || |||||||| |||||
Sbjct 706195 AATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCC 706136
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | ||| | ||| | || || ||||||||||||||||| || || ||
Sbjct 706135 TCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAT 706076
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| | || || ||||| ||||| |||||||||| || ||||| | |||||
Sbjct 706075 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTAC 706016
Query 27583 AATGTCCAAAAGG 27595
|| |||| ||||
Sbjct 706015 AACATCCAGAAGG 706003
>seq1
Length=3480556
Score = 100 bits (110), Expect = 3e-16
Identities = 231/331 (70%), Gaps = 14/331 (4%)
Strand=Plus/Minus
Query 31219 GACGCCAACTGGGCCGGTACCCACAAGTCGC-ACGAGTGCACGCTTATTATTACCGAGGG 31277
|| ||||||| ||| || ||| | || || ||||||||||||| || | || || ||
Sbjct 2614746 GAAGCCAACTTGGCGGGAACC-AGGCGTGGCCACGAGTGCACGCTAATCTTGACTGAAGG 2614688
Query 31278 TGACTCGGC-AAAGGCGCTTGCTATTGCTGGCTTGAGTG-TTGTGGGGCGCAATGCGT-T 31334
||||| || |||||| || ||| || |||| ||| || | | | | | ||| |
Sbjct 2614687 AGACTCTGCCAAAGGC-CTGGCTGTTTCTGGAC-GAGCCATTCTTGATCCCGAC-CGTAT 2614631
Query 31335 CGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGT 31394
||| ||||| || || || || || | || |||||||| ||||| ||| || | || |
Sbjct 2614630 CGGCGTGTTCCCACTTCGCGGTAAACTGCTAAACGTTCGAGACGCTTCCATTGACCAAAT 2614571
Query 31395 TACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATG-GCA-AG 31452
|| | || ||||| || ||| | || || |||| || || |||| ||| |
Sbjct 2614570 CACCAAAAACCAAGAGATTCAAAACATCAAGCAGTTCCTGGGTCTCAAGCACAAGCAGAC 2614511
Query 31453 GTATA-TAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGCAGA 31511
||| | | || || ||| | ||||| ||||||| ||||||||| ||| |||| ||
Sbjct 2614510 GTACACTGAT--ACGAAGA-ACTTGCGTTACGGTCACCTCATGATCATGGCCGATCAGGA 2614454
Query 31512 TCTCGACGGCAGTCACATCAAGGGTCTTGTC 31542
|| |||||| ||||| |||||||||||| ||
Sbjct 2614453 TCACGACGGTAGTCATATCAAGGGTCTTCTC 2614423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309466116720
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