Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 5e-12 >seq24 Length=1542676 Score = 86.0 bits (94), Expect = 5e-12 Identities = 266/406 (66%), Gaps = 22/406 (5%) Strand=Plus/Minus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| || || || || ||||||||| ||||| || Sbjct 36817 ACGTAGAACTGGGCAAACATG---TGACAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTT 36761 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGG 30172 |||||||| |||| | ||| || | | ||| | ||| |||| | || || | Sbjct 36760 GGGTTCCATGCGCTGAGGATCATTCTGCGGTCGTAGGGGCTGTTTCGCAGCTTGTGGATG 36701 Query 30173 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 | |||| |||||| || || ||| | || | |||||||| || Sbjct 36700 ATCTCGGC------CAGCTGGTCGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACA 36647 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 || ||||| || || |||| ||||||||| ||||| || || |||||||| || | || Sbjct 36646 TAGTCTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCG 36587 Query 30293 CTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | ||| || |||| | |||| | || || | ||| |||||| ||||||||||||| Sbjct 36586 CGGTGGGTGA-GCCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTT 36528 Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCT 30410 || ||| || ||| | |||| ||| ||||| || |||||| || |||| Sbjct 36527 GACGCCCACGTCGCTGAGGGCGGTGGACGAGGTGTTGCCCTC-GATGAACCAGAGGAGCT 36469 Query 30411 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | | | |||||| ||||| | |||||| ||||| ||||| Sbjct 36468 CGGCGATGACGGCGCGGAGGAAGACTCGCTTGGTGGTGAGCAGGGG 36423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309751300052