Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq35 131 1e-25
>seq35
Length=1329723
Score = 131 bits (144), Expect = 1e-25
Identities = 542/846 (64%), Gaps = 17/846 (2%)
Strand=Plus/Plus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|| ||||| ||| || ||||| |||||||| || || ||||| | | || || ||
Sbjct 994076 TTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 994135
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376
||||| || ||||| || || | | |||||| || || ||||| || |||
Sbjct 994136 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGC 994195
Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436
| || || || ||||| || || ||||| |||| || | ||| || || | |
Sbjct 994196 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA 994255
Query 4437 CTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495
|||||| || || | ||||| |||||||| || || | ||||| || ||||| ||
Sbjct 994256 G-CACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGAT 994314
Query 4496 ATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAACAATAAACAC 4550
|| || | || || | ||| || || | | || | | | ||
Sbjct 994315 TTCACGGATAATCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGGAGC----AGGCAA 994369
Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610
||||| || |||| || ||||| | || || ||||| || || || | ||
Sbjct 994370 GCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 994429
Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670
||||| | ||||||||| || ||||| || || | |||||| | || ||||| ||
Sbjct 994430 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 994489
Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730
|| || ||||| ||||| || || | || | || || | | ||||| | |||
Sbjct 994490 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATC 994549
Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790
|| || | ||||||| ||| || || | ||| ||||| || | || ||||| ||
Sbjct 994550 CACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 994609
Query 4791 AATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849
| | | || || | || | | || ||||| || || ||| || | ||
Sbjct 994610 AGGT-AGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 994668
Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909
|| || || || || || ||||| || ||||| ||||||| ||| || | | ||
Sbjct 994669 GGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTG 994728
Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969
||| ||| | || | || || | ||| ||||| || || ||||| ||| |||||
Sbjct 994729 AACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAA 994788
Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026
|| |||| | ||||| || ||||||| |||||| || || || |||||||
Sbjct 994789 GAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTC 994848
Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086
| ||| ||| || | | ||||| ||||| | ||||| || || || || || |||||
Sbjct 994849 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTT 994908
Query 5087 GTACAT 5092
||||||
Sbjct 994909 GTACAT 994914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427048918188623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |