Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq35 131 1e-25 >seq35 Length=1329723 Score = 131 bits (144), Expect = 1e-25 Identities = 542/846 (64%), Gaps = 17/846 (2%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||| || ||||| |||||||| || || ||||| | | || || || Sbjct 994076 TTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 994135 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || ||||| || || | | |||||| || || ||||| || ||| Sbjct 994136 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGC 994195 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | || || || ||||| || || ||||| |||| || | ||| || || | | Sbjct 994196 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA 994255 Query 4437 CTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 |||||| || || | ||||| |||||||| || || | ||||| || ||||| || Sbjct 994256 G-CACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGAT 994314 Query 4496 ATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAACAATAAACAC 4550 || || | || || | ||| || || | | || | | | || Sbjct 994315 TTCACGGATAATCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGGAGC----AGGCAA 994369 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| || |||| || ||||| | || || ||||| || || || | || Sbjct 994370 GCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 994429 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||||||| || ||||| || || | |||||| | || ||||| || Sbjct 994430 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 994489 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 || || ||||| ||||| || || | || | || || | | ||||| | ||| Sbjct 994490 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATC 994549 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | ||||||| ||| || || | ||| ||||| || | || ||||| || Sbjct 994550 CACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 994609 Query 4791 AATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | || || | || | | || ||||| || || ||| || | || Sbjct 994610 AGGT-AGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 994668 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 || || || || || || ||||| || ||||| ||||||| ||| || | | || Sbjct 994669 GGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTG 994728 Query 4910 AACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 ||| ||| | || | || || | ||| ||||| || || ||||| ||| ||||| Sbjct 994729 AACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAA 994788 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTG 5026 || |||| | ||||| || ||||||| |||||| || || || ||||||| Sbjct 994789 GAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTC 994848 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | ||| ||| || | | ||||| ||||| | ||||| || || || || || ||||| Sbjct 994849 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTT 994908 Query 5087 GTACAT 5092 |||||| Sbjct 994909 GTACAT 994914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048918188623