Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq66 152 7e-32 seq35 100 4e-16 >seq66 Length=2244893 Score = 152 bits (168), Expect = 7e-32 Identities = 442/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGT-CACCATCTTCCTTAACTCGTTTCAT 78013 ||||||||||| || ||||||||||| | ||||| || |||| || ||| || ||||| Sbjct 1021017 CCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTT-CTCAACACGCTTCAT 1021075 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || |||||||| ||||| ||||| | || || || |||| | ||||| || || Sbjct 1021076 GAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCC 1021135 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||||| || || || ||||| | | ||| | ||||| || || || || || Sbjct 1021136 GTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGAT 1021195 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | ||||| || || || || ||||| || | |||||||| ||||| || | Sbjct 1021196 GGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAA 1021255 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||| | ||| || || |||||||| || || || || || || | ||| ||| || Sbjct 1021256 GACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCC 1021315 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | || || ||| | | | || || || || |||||||| || || | || Sbjct 1021316 CGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGC 1021375 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || || | || |||||||||||||| || ||||| ||| |||||| | || || Sbjct 1021376 ACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAA 1021435 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || |||| ||| || || || || || || | || ||||| ||||| || Sbjct 1021436 GCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGT 1021495 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||| |||| || | || | |||||| |||| | || |||| | Sbjct 1021496 AAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCA 1021555 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || || || |||||||| | ||| ||||| |||| ||||| |||| || | Sbjct 1021556 AACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 1021615 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||| | ||||| |||| || || || || || || | ||| ||||||| Sbjct 1021616 CTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCG 1021675 Query 78614 CTCGTAAATAATAACAGA 78631 ||||| | ||| |||| Sbjct 1021676 GTCGTAGACAATGGCAGA 1021693 >seq35 Length=1329723 Score = 100 bits (110), Expect = 4e-16 Identities = 334/516 (65%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || || ||||| || || | || |||||||| || || | || Sbjct 994409 TCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCA 994468 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---G 48299 || | ||| ||||| || || || ||||| ||||| || ||| | || | | Sbjct 994469 AAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAG 994528 Query 48300 TAACTGGCTTCGTTGTGTATCCACC-GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 || | | | || || |||||| | || ||||| ||||||||||| | ||||| Sbjct 994529 GAAGAGTCCTTGTCCTGGATCCACTTGATG-GCCCAGTCAGCCTTCTTACGGATGCAAGG 994587 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418 || || || || || || ||||| |||| | || || || ||||| || || Sbjct 994588 AATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTC 994647 Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || | || || | |||||||| || || || || ||||| || ||||| || Sbjct 994648 GATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAA 994707 Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538 |||| || || | |||||| ||||| | || || || ||| ||||| || || Sbjct 994708 GCATCGAGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGAC 994767 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 || || || |||||||| || || | | || || || || || |||| Sbjct 994768 AATGCCGTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATC 994827 Query 48599 AGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | || |||||||| | | ||| || || | ||| | ||||| || ||||| Sbjct 994828 GTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || ||||| || ||||| ||||| | ||| || Sbjct 994888 GAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 994923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667662479840