Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq44 111 4e-19 seq42 89.7 1e-12 >seq44 Length=3047126 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| |||| | ||||| Sbjct 758551 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCG 758610 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | ||||||||| | | || || || Sbjct 758611 GCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTC 758670 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || ||| | || | |||| ||| ||| || || || || Sbjct 758671 CTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGT 758730 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| ||||| Sbjct 758731 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| ||| | || | ||||| Sbjct 1396951 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1396892 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||||| | || || ||||| || Sbjct 1396891 TCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1396832 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 1396831 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 1396772 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||| | |||||| || || Sbjct 1396771 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 1396734 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || |||||||| || ||||||||||||||| | || | || || Sbjct 758278 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 758337 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | ||| || ||||| || Sbjct 758338 TCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 758397 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | | || || ||| || || || || || || Sbjct 758398 TGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTC 758457 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||||||||| |||| Sbjct 758458 TTGCCGGTGAGAGTCTTGACGA 758479 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||| || ||||||||||| ||| | || | || || Sbjct 758049 GAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 758108 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || |||||||| || | ||||||||| | | ||| || ||||| || Sbjct 758109 TTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 758168 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| ||| ||||| | || | | | || || ||| ||||| || || || || Sbjct 758169 CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGT 758228 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 758229 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261 >seq42 Length=797865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | |||| ||||| || || || || |||||||| Sbjct 706005 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 706064 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||| |||| | |||||| ||||| || || || || |||||| | || Sbjct 706065 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 706124 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | |||| || ||| || ||||| || || || |||||||| || ||||||||||| Sbjct 706125 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 706183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818863383901