Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq44 187 5e-42 seq42 134 3e-26 seq35 91.5 3e-13 >seq44 Length=3047126 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| Sbjct 1396967 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 1396908 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 1396907 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGG 1396848 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1396847 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1396788 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 1396787 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1396737 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 758542 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 758601 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || || ||||||| ||| || |||||| || Sbjct 758602 CAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 758661 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||||||||| |||| || || Sbjct 758662 AATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCAC 758721 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 758722 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || |||| || | ||||| || || |||||||||||||| Sbjct 758035 CCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 758094 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || || || || || || ||||| | || || |||||| || Sbjct 758095 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 758154 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||||| || ||| | ||||| || || || | || ||| Sbjct 758155 ATACCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACT 758214 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 758215 TCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || || ||||||||||| || Sbjct 758262 ACCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCT 758321 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || |||||||| | ||| || ||||| || Sbjct 758322 CAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGG 758381 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || || || || || | || || Sbjct 758382 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCAC 758441 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 ||||| ||||| ||||| || || | |||||| |||| || Sbjct 758442 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGACTA 758482 >seq42 Length=797865 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| || || ||||||||||| || || || || || |||||| Sbjct 706005 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 706064 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 706065 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 706124 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 706125 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 706183 >seq35 Length=1329723 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||| | ||| ||| | || || ||| | |||||||| || || ||| | Sbjct 994284 GAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAG 994225 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || || || || |||||| | |||| || || || ||||||| | || Sbjct 994224 CAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTAC 994165 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 || ||| |||||||| | || |||||| ||| || || || || || |||||| Sbjct 994164 AAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTC 994105 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||||||||| |||| || || | | ||||||| Sbjct 994104 TTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCCGGTGT 994067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737443113674