Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq44 147 5e-30
>seq44
Length=3047126
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 1396743 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 1396802
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || || |||||||||||
Sbjct 1396803 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 1396862
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 1396863 CGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 1396922
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 1396923 CAGAAGGAGTCCACCCTCCACCTGGT 1396948
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || ||||||||||||||||| || |||
Sbjct 758766 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 758707
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| |||||||| || || || ||||| ||||||||
Sbjct 758706 ACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 758647
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || || ||||| ||||| | ||||| |||| || ||| ||
Sbjct 758646 CGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAACATC 758587
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 758586 CAGAAGGAGTCCACCCTCCACCTGGT 758561
Score = 138 bits (152), Expect = 3e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || |||||||| || || || ||||||||||||||||| || || ||||| |
Sbjct 758479 TCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTG 758420
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| |||||||| || || |||||||| |||||||| || || |
Sbjct 758419 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCA 758360
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || || || | || || |||||| ||| |||| || |
Sbjct 758359 TCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGG 758300
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || |||||
Sbjct 758299 AGTCTACCCTCCACCTTGT 758281
Score = 118 bits (130), Expect = 3e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || || || || ||||| || || ||||| || ||
Sbjct 758258 CAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCTGAT 758199
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||||||||||||| || || ||||| || ||||||||
Sbjct 758198 ACCATCGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAGCAG 758139
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| ||||| || | || || ||| || ||| ||
Sbjct 758138 CGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATC 758079
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 758078 CAGAAGGA 758071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203729179612414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |