Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq44 149 6e-31
seq42 111 1e-19
seq77 89.7 5e-13
>seq44
Length=3047126
Score = 149 bits (164), Expect = 6e-31
Identities = 175/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||||| || || ||| ||||||||| ||||| ||||||
Sbjct 1396969 CCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1396910
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|||||||| | || ||||||||||| || || || |||| ||||| ||||||| |
Sbjct 1396909 CTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGG 1396850
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811
|||| || |||||||||| ||| || ||| ||| | | | |||||| |||||
Sbjct 1396849 GGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTC 1396791
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| | || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 1396790 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1396737
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||| |||||||| ||||| ||||| ||||| ||||| | |||
Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||||| | | | | ||||||| ||||||||
Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCA-CATTGTCGATAGTGTCGGAAGACTCCAC 758721
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || || || || || || ||||| ||||| || ||||||
Sbjct 758722 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 758770
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | |||| ||||| |||||||||||||| ||||| ||||||
Sbjct 758034 GCCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 758093
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||||| |||| || |||||||| || ||||| || |||||||| ||||| | |||
Sbjct 758094 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGG 758153
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | |||| | ||| | | | || || |||||||
Sbjct 758154 GATACCCTCCTTGTCC-TGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCA 758212
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| |||| || || || || || |||| ||||| || || ||||||||
Sbjct 758213 CTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261
Score = 89.7 bits (98), Expect = 5e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||| ||||| || |||
Sbjct 758263 CCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 758322
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| || || || || || ||||| ||||| | ||
Sbjct 758323 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 758382
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| | || | || | | ||| ||||||||
Sbjct 758383 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCGGATGACTCCAC 758441
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 758442 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 758479
>seq42
Length=797865
Score = 111 bits (122), Expect = 1e-19
Identities = 136/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||| |
Sbjct 706003 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 706062
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| ||||| || |||| ||| | | |||||||||| ||| || ||| || |
Sbjct 706063 TCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 706122
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||| ||||| | || || || || |||||||| ||||| ||
Sbjct 706123 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 706180
Query 41851 GAAA 41854
||||
Sbjct 706181 GAAA 706184
>seq77
Length=2105403
Score = 89.7 bits (98), Expect = 5e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| || || ||||| || ||||||||| ||||||| |||||| |||||||| |||
Sbjct 1827380 CGAATTGCTCCTCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACCGGCGCCGGCGTC 1827321
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACG 85908
|||||||| || ||||||||| ||||| | | |||||||||||||
Sbjct 1827320 ATCGACGCAGATTACCGCGGACCCGTCAAGGTGCTCCTCTTCAACCACG 1827272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303242977200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |