Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 >seq7 Length=2824016 Score = 150 bits (166), Expect = 2e-31 Identities = 560/868 (65%), Gaps = 31/868 (4%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| |||| || || || ||||| ||||| || ||||| | || || || |||| Sbjct 1203419 TTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCT 1203360 Query 16734 CCATGAAATCAAAAGGATT--AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| ||||| || || || | || |||| || | | | || || || ||| Sbjct 1203359 CCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCG--TTGCCAAGAGCGACGAG 1203302 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | ||| || ||||| || || || || ||| | | |||||| || | || Sbjct 1203301 CAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAG 1203242 Query 16852 ACGTACCGGA-AGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 | | || || ||||| || ||||| ||| |||||| || || || || | || | Sbjct 1203241 A-GCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGA 1203183 Query 16911 T---ACTAGCAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 | || || ||| || || | |||| || || || | ||| || Sbjct 1203182 TTTCACGGATAATCTCCTTGCTGGCGCGGTTC----TTCAGGTGAGAGTGGAGCAGGCAA 1203127 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 || || ||| || | |||||||| | ||| || ||||| || || |||| || Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 ||||| |||| ||||| | ||| || || | ||| || | || ||||| ||| Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 |||||||||| ||||| || | | || | || | | | ||| |||| | ||| Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATC 1202947 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA- 17205 || || |||| || || || | |||||| || || || ||||| || || Sbjct 1202946 CACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAG 1202887 Query 17206 ---TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || || | || |||| | || | | || || |||||||| ||| ||| | Sbjct 1202886 AGGTAGTTGCGCTGG---CTGT-GCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGT 1202831 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 |||||||| ||||||||||| ||||| || ||||| |||||||| || || | || Sbjct 1202830 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 1202771 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 ||||| || || ||| || || | || || ||||| || ||||||||| || || Sbjct 1202770 CTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 1202711 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------ 17436 || || ||||| || || ||||| || || ||||| | || ||| Sbjct 1202710 AAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG---GCGGTTGTT 1202654 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 |||||| | | ||| ||||| | ||| | ||||||| |||||| || |||| | || Sbjct 1202653 CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGC 1202594 Query 17497 CTTTTTATACATATTCCAAATATCATTG 17524 |||||| ||||| | ||| || | |||| Sbjct 1202593 CTTTTTGTACATTTGCCAGATCTAATTG 1202566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545451205640