Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 149 7e-31 >seq7 Length=2824016 Score = 149 bits (164), Expect = 7e-31 Identities = 370/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 1203129 CAAGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGG 1203070 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || | ||| || ||||| || ||||| ||||| | ||| ||||| Sbjct 1203069 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 1203010 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATGT 24311 || || || || || |||||||||| ||| | | || || | | |||| || Sbjct 1203009 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGG 1202950 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| ||||| || |||||||| | ||||| || ||||| || || || Sbjct 1202949 ATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTG 1202890 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| ||||| | | || || || || || || || | || || | Sbjct 1202889 AAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTC 1202830 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || ||||| || || || || || |||||||| |||| |||||||| ||| Sbjct 1202829 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATC 1202770 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || | || || || | | || || || || || ||||| ||| ||| Sbjct 1202769 TGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCA 1202710 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCA 24607 || || ||||| | || || || || || ||||| | || | | | || ||||| Sbjct 1202709 AAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCA 1202651 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | | ||| || || | ||| | ||||| | ||||| || || ||||| ||||| Sbjct 1202650 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 1202591 Query 24668 TTTATACATATTCCAGAT 24685 ||| ||||| | |||||| Sbjct 1202590 TTTGTACATTTGCCAGAT 1202573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721429305040