Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 325 4e-84 seq6 147 2e-30 seq1 118 1e-21 >seq7 Length=2824016 Score = 325 bits (360), Expect = 4e-84 Identities = 562/808 (70%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||| ||| | || ||| Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 1202692 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || ||| ||||||||| ||||||||||| |||||||||||| Sbjct 1202693 CACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 1202752 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||||||||| || |||||| ||| Sbjct 1202753 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 1202812 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || ||||||||||| ||||| | || | Sbjct 1202813 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC--A 1202870 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | || | | || |||||||| ||||| || || ||| || ||||||| Sbjct 1202871 GCCAGCGCAACTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGC 1202928 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | |||||| | || || | |||| | ||||||| || || Sbjct 1202929 TGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGC 1202988 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||||||||| ||||||| || || ||| |||| || |||||||| Sbjct 1202989 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 1203048 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| | || |||||||| |||||||| ||| ||||||||||||||| | |||||||| Sbjct 1203049 GAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 1203108 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 |||||| ||||||||| || |||| | || || | | || | ||| || Sbjct 1203109 TCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGA 1203168 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || | || ||| |||| || || ||| |||||||| ||| | ||||| || Sbjct 1203169 GATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGC 1203228 Query 117289 GCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || |||| ||||||||| | || || | | |||| ||| ||||| ||||| Sbjct 1203229 TCTCCCCTGTGC-TCTGCTGGGCATGAA-CGCCACCCTGATGAAGCAGTACATTGAGTTT 1203286 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || ||||| | ||||| ||| || | | || ||| ||||| | ||||||| Sbjct 1203287 GTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCC 1203346 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 1203347 TTTGACTTCATGGAGAACATCTCCCTGG 1203374 >seq6 Length=3085841 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1398276 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1398335 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 1398336 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1398394 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| || || || ||||| || || | |||||||| | |||||| Sbjct 1398395 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 1398454 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| |||| || || || || ||||| || | || || ||| Sbjct 1398455 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGGC 1398509 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || || | | Sbjct 760439 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 760380 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| ||| |||| ||||| ||||| |||||| | ||||| Sbjct 760379 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 760321 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 760320 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 760261 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 760260 CATCCAGAAGGAGAGCACCCTGCA 760237 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| ||||| |||||||| |||| ||||| | |||| | | Sbjct 760660 TAGTCGTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCA 760601 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||| ||||| | |||||||| || Sbjct 760600 TTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGT 760542 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || || ||||| || |||| |||||||| | ||| |||||||||||| Sbjct 760541 CTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAG 760482 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 |||||| | || || || || || Sbjct 760481 AAGGAGTCTACCCTTCACCTTGT 760459 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | || Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| |||||||| || | |||||| Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGT 760739 >seq1 Length=7294945 Score = 118 bits (130), Expect = 1e-21 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||| || | ||||| || || || |||||||| ||||||||| | || ||||| | Sbjct 2968948 AAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTC 2968889 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| || || | ||||| ||||| |||||| |||| Sbjct 2968888 CTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 2968829 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | |||| ||| ||||| ||||| || || | || ||||| ||||| Sbjct 2968828 TCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTA 2968769 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 2968768 CAACATCCAGAAGG 2968755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219051874480