Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 5e-24
seq1 93.3 3e-14
>seq6
Length=3085841
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||| ||| | || || || ||||| |||||||||||| |
Sbjct 760213 CCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 760272
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| |||||| || ||||| ||||| ||||||||||| |||
Sbjct 760273 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 760332
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| |||||| ||| | | | | || | ||| | || || ||
Sbjct 760333 ATACCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACT 760392
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| || |||||||| | ||| || ||||||||||||||
Sbjct 760393 TCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 760439
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| ||||||||||||||||| ||| | ||
Sbjct 760736 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 760795
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||||| ||||| || || ||||||||||| || | || |||||||||
Sbjct 760796 TCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 760855
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | |||| || || || || | ||||||||
Sbjct 760856 TGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 760915
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || ||||| |||||
Sbjct 760916 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 760947
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || ||||| |||||||| ||| ||| || ||||
Sbjct 760456 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCC 760515
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || || ||||| |||||||||||| || | | |||||||||
Sbjct 760516 TCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 760575
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||||| || ||||| || | ||||||||
Sbjct 760576 TGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTC 760635
Query 34358 TTGCCGGTGAGAGTTTTCAC 34377
|||||||||||||| || ||
Sbjct 760636 TTGCCGGTGAGAGTCTTGAC 760655
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||||||| | || || ||||| |||||||||||| |
Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||| || || || || | ||||||||||| |||
Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | |||| || || ||
Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || ||||| || || || || |||||||||
Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 1398278
>seq1
Length=7294945
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||| ||||| ||| | || || | ||||||||| ||||| ||
Sbjct 2968757 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 2968816
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| |||||||| || ||| | | ||||||||| ||||| ||| | || | |
Sbjct 2968817 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 2968876
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| |||| || ||||| || | |||||||| ||||| || || || ||||| ||
Sbjct 2968877 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 2968935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071909438880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |