Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 3e-33
>seq1
Length=7294945
Score = 158 bits (174), Expect = 3e-33
Identities = 415/627 (66%), Gaps = 21/627 (3%)
Strand=Plus/Plus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | ||| || | ||| | | ||| | ||||| || ||||||
Sbjct 1232573 GCCATTGTCTACGACCGAGACTTCAACTACCAATACTTCGGCTTCAAGACACTGGAGCGG 1232632
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| |||||||| || ||||||||||||| || || ||| ||||||||| | |||||
Sbjct 1232633 TCATATCTCCTGAAGCTTGATGGCAAGATTGTTGAGCGACCACAGCACATGATTATGCGT 1232692
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
|||||||| || || || |||| ||| | || || ||||| ||| | |||
Sbjct 1232693 GTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTCCTTGAGACATACCACCTCATG 1232752
Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
|| || || | || |||||| | || || ||||||||||| |||||| | ||
Sbjct 1232753 TCCAGCAAATTCT---TTACCCATGCCTCTCCCACCCTCTTCAACGCTGGTACC--CCAC 1232807
Query 249028 AA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085
|| ||||||| ||| ||||| || | | |||| | |||||| | || || || |
Sbjct 1232808 AAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCT 1232867
Query 249086 ATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144
| ||||| | |||| | | | || | |||||| || | || || || ||||| || |
Sbjct 1232868 ACGACACTC-TAAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAAC 1232926
Query 249145 GTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGT 249204
||| | ||||| || | ||| || ||||| || || || || | | |||
Sbjct 1232927 GTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGT 1232986
Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG---- 249260
||| | ||| | |||||| ||| | ||| ||||| | | || |||||| ||
Sbjct 1232987 ATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAAC 1233046
Query 249261 --GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAG 249318
||||| || | || ||||| || | || |||||||||||| | || |||
Sbjct 1233047 AAGCGCC---CTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTTGAG 1233103
Query 249319 TTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTAC 249378
||||| ||| | |||||| ||||||| || | | || |||||||| ||| |
Sbjct 1233104 TTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGTGACCTGTTCCTC 1233163
Query 249379 GGCCTGTGGGTCTCCGACTTGTTCATG 249405
| || ||| || | || ||||||||
Sbjct 1233164 GCTCTCTGGATCCCTGATCTGTTCATG 1233190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766083574464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |