Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 158 3e-33 >seq1 Length=7294945 Score = 158 bits (174), Expect = 3e-33 Identities = 415/627 (66%), Gaps = 21/627 (3%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | ||| || | ||| | | ||| | ||||| || |||||| Sbjct 1232573 GCCATTGTCTACGACCGAGACTTCAACTACCAATACTTCGGCTTCAAGACACTGGAGCGG 1232632 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || |||||||| || ||||||||||||| || || ||| ||||||||| | ||||| Sbjct 1232633 TCATATCTCCTGAAGCTTGATGGCAAGATTGTTGAGCGACCACAGCACATGATTATGCGT 1232692 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 |||||||| || || || |||| ||| | || || ||||| ||| | ||| Sbjct 1232693 GTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTCCTTGAGACATACCACCTCATG 1232752 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || || || | || |||||| | || || ||||||||||| |||||| | || Sbjct 1232753 TCCAGCAAATTCT---TTACCCATGCCTCTCCCACCCTCTTCAACGCTGGTACC--CCAC 1232807 Query 249028 AA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085 || ||||||| ||| ||||| || | | |||| | |||||| | || || || | Sbjct 1232808 AAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCT 1232867 Query 249086 ATGACACGCTTAAACAGACG-GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 | ||||| | |||| | | | || | |||||| || | || || || ||||| || | Sbjct 1232868 ACGACACTC-TAAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAAC 1232926 Query 249145 GTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGT 249204 ||| | ||||| || | ||| || ||||| || || || || | | ||| Sbjct 1232927 GTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGT 1232986 Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG---- 249260 ||| | ||| | |||||| ||| | ||| ||||| | | || |||||| || Sbjct 1232987 ATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAAC 1233046 Query 249261 --GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAG 249318 ||||| || | || ||||| || | || |||||||||||| | || ||| Sbjct 1233047 AAGCGCC---CTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTTGAG 1233103 Query 249319 TTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTAC 249378 ||||| ||| | |||||| ||||||| || | | || |||||||| ||| | Sbjct 1233104 TTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGTGACCTGTTCCTC 1233163 Query 249379 GGCCTGTGGGTCTCCGACTTGTTCATG 249405 | || ||| || | || |||||||| Sbjct 1233164 GCTCTCTGGATCCCTGATCTGTTCATG 1233190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766083574464