Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 163 6e-35 seq1 150 4e-31 >seq7 Length=2824016 Score = 163 bits (180), Expect = 6e-35 Identities = 304/443 (69%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || || || |||||||| || || || || || ||||| |||| Sbjct 1202982 TTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCT 1203041 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| || ||| | ||||||| || |||| |||||| ||| |||| ||| | | Sbjct 1203042 GGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTG 1203101 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC- 102094 |||| ||||| || ||||||||| ||| |||| | || || ||| Sbjct 1203102 ACGAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACCG 1203156 Query 102095 --CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| |||| || | || | |||||| ||||||| |||||| |||| || ||||||| Sbjct 1203157 CGCCAGCAAG-GAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAAT 1203215 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | | || | | || || | | |||| |||||| || |||||| |||| Sbjct 1203216 TCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 1203275 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 ||||||| ||||| || ||| || | || | | || || ||| || || Sbjct 1203276 ACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGT 1203335 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||||||||| |||||||| || || ||||| | ||||||||||| || | Sbjct 1203336 CCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCG 1203395 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 | ||| | |||| |||||| ||| Sbjct 1203396 AGAAGCGTGTCGGCGAGTACCAA 1203418 >seq1 Length=7294945 Score = 150 bits (166), Expect = 4e-31 Identities = 432/657 (66%), Gaps = 12/657 (2%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| || ||| || ||||| |||| |||| || |||||||||| | ||| Sbjct 1233313 ACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTC 1233254 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---A 94507 | |||||||||||| |||| ||||||||||| | ||| | || || |||| | Sbjct 1233253 AGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGT----CCAAGTTCTTCTCAA 1233198 Query 94508 CTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAAT 94567 | | || |||||| ||||||| | ||||| ||| |||| || || | | | | | Sbjct 1233197 CACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCT 1233138 Query 94568 CTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAG 94627 |||| || ||| ||||| | | ||||| || || || || |||||| Sbjct 1233137 CTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCT 1233078 Query 94628 AAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAG 94687 | |||||||| || || | ||||| || |||||| || | | | ||| Sbjct 1233077 CGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 1233018 Query 94688 AGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGA-A 94746 | ||| |||| | | || | | |||| ||| | |||||| | || || | Sbjct 1233017 TGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGG-TGCCGGCA 1232959 Query 94747 ATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806 ||| || | || | | | || | || | ||||| || ||||| ||||| Sbjct 1232958 ATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 1232899 Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866 || || || || ||| ||||| || || |||||||||||||| || || | | | Sbjct 1232898 GAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 1232839 Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGTTCCACAATTAAACAGTGTGGG 94925 ||| |||||||| ||||| || || | | ||| || ||| || || || ||||| Sbjct 1232838 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGG-GTACCAGCGTTGAAGAGGGTGGG 1232780 Query 94926 GGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGAT 94985 || ||||||||||| | | || |||||||| | ||||| |||| |||| | || Sbjct 1232779 AGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAAT 1232720 Query 94986 GTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || ||| || ||| |||||||||||||||||||||| ||| || |||||||| Sbjct 1232719 GTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAAC 1232663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583708381965