Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq7 163 6e-35
seq1 150 4e-31
>seq7
Length=2824016
Score = 163 bits (180), Expect = 6e-35
Identities = 304/443 (69%), Gaps = 9/443 (2%)
Strand=Plus/Plus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||||||||||||||| || || || |||||||| || || || || || ||||| ||||
Sbjct 1202982 TTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCT 1203041
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035
|| ||||||| || ||| | ||||||| || |||| |||||| ||| |||| ||| | |
Sbjct 1203042 GGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTG 1203101
Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC- 102094
|||| ||||| || ||||||||| ||| |||| | || || |||
Sbjct 1203102 ACGAGGGTCTGCACACCGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACCG 1203156
Query 102095 --CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
||| |||| || | || | |||||| ||||||| |||||| |||| || |||||||
Sbjct 1203157 CGCCAGCAAG-GAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAAT 1203215
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| | || | | || || | | |||| |||||| || |||||| ||||
Sbjct 1203216 TCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 1203275
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272
||||||| ||||| || ||| || | || | | || || ||| || ||
Sbjct 1203276 ACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGT 1203335
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|||||||||| |||||||| || || ||||| | ||||||||||| || |
Sbjct 1203336 CCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCG 1203395
Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355
| ||| | |||| |||||| |||
Sbjct 1203396 AGAAGCGTGTCGGCGAGTACCAA 1203418
>seq1
Length=7294945
Score = 150 bits (166), Expect = 4e-31
Identities = 432/657 (66%), Gaps = 12/657 (2%)
Strand=Plus/Minus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| || ||| || ||||| |||| |||| || |||||||||| | |||
Sbjct 1233313 ACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTC 1233254
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---A 94507
| |||||||||||| |||| ||||||||||| | ||| | || || |||| |
Sbjct 1233253 AGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGT----CCAAGTTCTTCTCAA 1233198
Query 94508 CTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAAT 94567
| | || |||||| ||||||| | ||||| ||| |||| || || | | | | |
Sbjct 1233197 CACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCT 1233138
Query 94568 CTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAG 94627
|||| || ||| ||||| | | ||||| || || || || ||||||
Sbjct 1233137 CTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCT 1233078
Query 94628 AAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAG 94687
| |||||||| || || | ||||| || |||||| || | | | |||
Sbjct 1233077 CGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 1233018
Query 94688 AGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGA-A 94746
| ||| |||| | | || | | |||| ||| | |||||| | || || |
Sbjct 1233017 TGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGG-TGCCGGCA 1232959
Query 94747 ATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806
||| || | || | | | || | || | ||||| || ||||| |||||
Sbjct 1232958 ATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 1232899
Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866
|| || || || ||| ||||| || || |||||||||||||| || || | | |
Sbjct 1232898 GAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 1232839
Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGTTCCACAATTAAACAGTGTGGG 94925
||| |||||||| ||||| || || | | ||| || ||| || || || |||||
Sbjct 1232838 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGG-GTACCAGCGTTGAAGAGGGTGGG 1232780
Query 94926 GGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGAT 94985
|| ||||||||||| | | || |||||||| | ||||| |||| |||| | ||
Sbjct 1232779 AGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAAT 1232720
Query 94986 GTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
|| ||| || ||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 1232719 GTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAAC 1232663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583708381965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |