Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 269 4e-67 seq1 150 3e-31 seq6 96.9 5e-15 >seq7 Length=2824016 Score = 269 bits (298), Expect = 4e-67 Identities = 599/882 (68%), Gaps = 39/882 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||||||| | |||||| Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 1202688 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||| |||||||| | |||||| || || |||||||| || ||| | Sbjct 1202689 CTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGA 1202748 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 1202749 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 1202807 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||| || || |||| ||| | || | Sbjct 1202808 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 1202867 Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || || || || ||||| ||||| || || || | || | || ||||| | Sbjct 1202868 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGA 1202924 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||||| | |||| || ||||||| | ||| | | ||||| | || | | || | Sbjct 1202925 AGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTG 1202984 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| || ||||| ||||||| |||| Sbjct 1202985 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 1203044 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||| | || |||||||| || ||||| | |||||| | || ||||| |||| Sbjct 1203045 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACG 1203104 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609 |||| || ||| |||||||| | ||| | | ||| || || | || | Sbjct 1203105 AGGGTCTGCACACCGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAAC 1203154 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 | ||||| | || | || | || | || |||||||| || || || ||||| Sbjct 1203155 CGCGCCAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAA 1203214 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | ||||| | || || | || || | ||||||||| || || ||| | Sbjct 1203215 TTCTTGACCGAGGCTCT-CCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCA 1203273 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785 |||||| |||||||| || |||||||| || || ||||| || |||||||| Sbjct 1203274 GTACATTGAGTTTGTTGCCGATCGTCTGCT---CGTCGCTCTTGGCAACGAGAAGATTTA 1203330 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 ||| || || |||||||| |||||| | ||| || || | || ||||||||||| Sbjct 1203331 CAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 1203390 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTGTC 125885 ||||||||| ||| |||||||| ||| || ||||||| Sbjct 1203391 CTTCGAGAAGCGTGTCGGCGAGTACCAAAAGGC--CGGTGTC 1203430 >seq1 Length=7294945 Score = 150 bits (166), Expect = 3e-31 Identities = 322/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || || | ||| ||||| | || |||| Sbjct 1233024 GATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 1233083 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || ||||| || | || | ||||| ||| ||| ||||||| | Sbjct 1233084 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 1233143 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042 | ||| | ||| |||| || |||||| | || ||| ||||||||||||| || | Sbjct 1233144 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGA 1233203 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| |||||| | ||||||||| || | || || || | || |||| Sbjct 1233204 AGAACTTGG--ACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTA 1233261 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161 |||||||| || ||||| ||| | |||||| | |||||| | || |||| Sbjct 1233262 TGGCGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGAC 1233321 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| || | |||| |||||| | ||||| | ||| ||| |||||||| | Sbjct 1233322 TATCCGA-GCTC-AGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1233379 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || ||||| |||||||| || |||| ||| Sbjct 1233380 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1233439 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| ||||||| || ||||| || || || |||||| | | || |||||| Sbjct 1233440 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAG 1233493 >seq6 Length=3085841 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| || |||| ||| |||| ||| |||| || |||||| | |||| ||| Sbjct 1976998 TCAATGTACTCGACGACGCGCTCAAAGTCCTTCTCTCCGAAGCCACGGCTGGTCATGGCA 1977057 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||| | || ||| |||| || | |||||||||||||||||||| | | ||| Sbjct 1977058 GGGGTACCAATTCGGATACCGCAAGGAGTCAGAGCGCTCTTGTCTCCGGGAATGGCGTTC 1977117 Query 126802 TTGTTGCAAGCGATTCTGCACAGTTCGAGGA 126832 |||||||| || || || | | ||||||| Sbjct 1977118 TTGTTGCAGGCAATGTTGATCTGCTCGAGGA 1977148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058986945480