Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7 269 4e-67
seq1 150 3e-31
seq6 96.9 5e-15
>seq7
Length=2824016
Score = 269 bits (298), Expect = 4e-67
Identities = 599/882 (68%), Gaps = 39/882 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| ||||| ||||| | ||||||| | ||||||
Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134
|||||||| ||| |||| ||| | | || ||| || ||| |||| | || ||
Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 1202688
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||| |||||||| | |||||| || || |||||||| || ||| |
Sbjct 1202689 CTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGA 1202748
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 1202749 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 1202807
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | ||||| || || |||| ||| | || |
Sbjct 1202808 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 1202867
Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
|| || || || ||||| ||||| || || || | || | || ||||| |
Sbjct 1202868 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGA 1202924
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
||||| | |||| || ||||||| | ||| | | ||||| | || | | || |
Sbjct 1202925 AGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTG 1202984
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || || ||||| ||||| |||||||| || ||||| ||||||| ||||
Sbjct 1202985 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 1203044
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||| | || |||||||| || ||||| | |||||| | || ||||| ||||
Sbjct 1203045 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACG 1203104
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609
|||| || ||| |||||||| | ||| | | ||| || || | || |
Sbjct 1203105 AGGGTCTGCACACCGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAAC 1203154
Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669
| ||||| | || | || | || | || |||||||| || || || |||||
Sbjct 1203155 CGCGCCAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAA 1203214
Query 125670 TTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728
|| | ||||| | || || | || || | ||||||||| || || ||| |
Sbjct 1203215 TTCTTGACCGAGGCTCT-CCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCA 1203273
Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785
|||||| |||||||| || |||||||| || || ||||| || ||||||||
Sbjct 1203274 GTACATTGAGTTTGTTGCCGATCGTCTGCT---CGTCGCTCTTGGCAACGAGAAGATTTA 1203330
Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845
||| || || |||||||| |||||| | ||| || || | || |||||||||||
Sbjct 1203331 CAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 1203390
Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTGTC 125885
||||||||| ||| |||||||| ||| || |||||||
Sbjct 1203391 CTTCGAGAAGCGTGTCGGCGAGTACCAAAAGGC--CGGTGTC 1203430
>seq1
Length=7294945
Score = 150 bits (166), Expect = 3e-31
Identities = 322/474 (68%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
||||||| ||||| ||||| || || || || || | ||| ||||| | || ||||
Sbjct 1233024 GATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 1233083
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| || || ||||| || | || | ||||| ||| ||| ||||||| |
Sbjct 1233084 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 1233143
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042
| ||| | ||| |||| || |||||| | || ||| ||||||||||||| || |
Sbjct 1233144 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGA 1233203
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
|| ||| |||||| | ||||||||| || | || || || | || ||||
Sbjct 1233204 AGAACTTGG--ACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTA 1233261
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161
|||||||| || ||||| ||| | |||||| | |||||| | || ||||
Sbjct 1233262 TGGCGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGAC 1233321
Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220
| ||| || | |||| |||||| | ||||| | ||| ||| |||||||| |
Sbjct 1233322 TATCCGA-GCTC-AGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1233379
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | || || ||||||||| || || ||||| |||||||| || |||| |||
Sbjct 1233380 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1233439
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
||| ||||||| || ||||| || || || |||||| | | || ||||||
Sbjct 1233440 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAG 1233493
>seq6
Length=3085841
Score = 96.9 bits (106), Expect = 5e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741
|||||||| || |||| ||| |||| ||| |||| || |||||| | |||| |||
Sbjct 1976998 TCAATGTACTCGACGACGCGCTCAAAGTCCTTCTCTCCGAAGCCACGGCTGGTCATGGCA 1977057
Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801
|| ||||| | || ||| |||| || | |||||||||||||||||||| | | |||
Sbjct 1977058 GGGGTACCAATTCGGATACCGCAAGGAGTCAGAGCGCTCTTGTCTCCGGGAATGGCGTTC 1977117
Query 126802 TTGTTGCAAGCGATTCTGCACAGTTCGAGGA 126832
|||||||| || || || | | |||||||
Sbjct 1977118 TTGTTGCAGGCAATGTTGATCTGCTCGAGGA 1977148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058986945480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |