Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 333 7e-86 >seq1 Length=7294945 Score = 333 bits (368), Expect = 7e-86 Identities = 1068/1635 (65%), Gaps = 44/1635 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | || || | | ||| ||||| || | | | ||| |||| || Sbjct 1232765 TTTACCCATGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCA 1232824 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| ||| |||||||||| ||||| || |||| Sbjct 1232825 TGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACA 1232884 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | |||||||||| || || || || || | | || ||||| | | ||||| Sbjct 1232885 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAACG-TCCACCGTATCCGTGC 1232943 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||||||| |||||| || ||| || || | | ||||||||||| Sbjct 1232944 TACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCG 1233003 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| ||||| || ||||||||||||||||| |||||| || || || Sbjct 1233004 AGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTT 1233063 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 ||| || || ||||||||| || |||||| | |||||||| ||||| ||||| || || Sbjct 1233064 TGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAA 1233123 Query 363905 ACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || |||||| | ||||| ||||| |||||| || || ||| | |||| Sbjct 1233124 CCACGGCAAGGAAGAGG---TCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGA 1233180 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAA-TTGGTC---ACTCT--TTTGCCCACA 364016 | || |||||||| || ||| ||||| |||| | ||| | | ||||| | Sbjct 1233181 TCTGTTCATGAAGCGTGTTGAG------AAGAACTTGGACTGGACTTTGATGTGCCCCAA 1233234 Query 364017 CGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 |||||| || || ||| | || || ||| || || || | | ||||| || || ||| Sbjct 1233235 CGAATGCCCTGGCCTTGCTGACTGCTAT--GGCGAAGAATTCGAGGCTCTGTATGAGAAG 1233292 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 || || |||||| |||| ||| ||||| || | || |||||||| |||| ||||| Sbjct 1233293 TACGAGAAGGAGGGCAAGGGTCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCCATC 1233352 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 | || | |||| |||||| || | |||| |||| | ||||| ||| | ||||||||| Sbjct 1233353 CTAGAGGCCCAGACTGAGACTGGTAACCCCTTTATGCTTTACAAGGATGCCTGCAACCGC 1233412 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTAT 364253 ||| ||||||| || |||| || || | || | || |||||| || || ||||| | Sbjct 1233413 AAGAGCAACCAGAAGAACCTGGGAACCA-TCCGAAGCTCCAACCTCTGCACTGAGATCGT 1233471 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | || || |||||| || || || ||| | || || | || || || || Sbjct 1233472 TGAGTACTCTGCCCCTGACGAGGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGC 1233531 Query 364314 GTTTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA 364367 ||||| || || || | |||| || | ||| | || || ||| | Sbjct 1233532 CTTTGTCGACTATAACGAAGGCTGCTATGACTTTAAGAAGCTTCACGATGTTACCAAGGT 1233591 Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG 364426 | | | || ||| || | ||||| ||| || || || ||| || || || Sbjct 1233592 GGTTGTCCGTAACCTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCG 1233651 Query 364427 -AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTT 364485 | | ||| | || || || || |||||| ||||||| ||||| || ||||||| | Sbjct 1233652 CAAC--AGTAACAGCCGCCACCGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCT 1233709 Query 364486 TTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATC 364545 || | || | | || || || || || ||||| | | || ||| | ||| Sbjct 1233710 TTCCTCGCTCTGCGTCTTCCTTTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATC 1233769 Query 364546 TTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGA 364605 ||||| || || || || || | || || || | || || | | |||| Sbjct 1233770 TTTGAGACCATCTACCACGCTGCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGT 1233829 Query 364606 AAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG 364665 || | | |||| || || || | || | |||||||||| | ||| Sbjct 1233830 CCTTATGAGTCATTCAAGGGATCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGG 1233889 Query 364666 AATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCA 364724 |||||| ||| ||| || ||| | ||||| |||| | | | | ||||| |||| Sbjct 1233890 GATGTCAAGCCCACTGACCTGTGGGAGTGGGACTCGCTCAAGGAGC-AGATTAAGGAGCA 1233948 Query 364725 TGGTACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGAT 364781 |||| ||||||| | ||||| || ||||||||||| || ||| | ||||| Sbjct 1233949 CGGTATTCGCAACAGTTTGCTCGT---CGCCCCCATGCCCACTGCCAGCACTTCCCAGAT 1234005 Query 364782 CCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCT 364841 ||| || ||||| || |||||||| || | || ||| | || || || || || Sbjct 1234006 CCTGGGCAACAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCT 1234065 Query 364842 TTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCT 364901 | | || || || | ||| || || | || ||||||||||| ||| || || Sbjct 1234066 TGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCT 1234125 Query 364902 GTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || ||||||||| ||||| || | || |||||| | ||||||||||| Sbjct 1234126 CTGGTCCGATGCTATGAAGAACCGCATCATTGCTGAGAACGGTTCTATCCAGAACATTCC 1234185 Query 364962 AGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAAC 365021 |||| | || | ||| | | ||||| || || ||||| || || ||| Sbjct 1234186 CAACATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCGCCA 1234245 Query 365022 TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGT 365081 || | | ||| | ||||| || |||||||| || |||| |||||| || ||| | Sbjct 1234246 CATCGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTGAACAT 1234305 Query 365082 ATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATC 365141 ||||| | || || | |||| |||| |||||| ||| || ||||| Sbjct 1234306 CCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCT 1234365 Query 365142 CGGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 1234366 TGGTCTCAAGACTGG 1234380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353215917986