Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq7 138 1e-27 seq1 131 2e-25 >seq6 Length=3085841 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || ||||||||||||||| Sbjct 760441 CCACCACGAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 760500 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| |||||| Sbjct 760501 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 760560 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||||| Sbjct 760561 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACC 760620 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || ||||| ||||| || |||| Sbjct 760621 TCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 760657 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||||| Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| || |||||||||||||| || Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 760721 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 760780 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| |||| | |||||||||||| ||||| Sbjct 760781 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 760840 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||| |||| ||||| | Sbjct 760841 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 760900 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 760901 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 760948 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || || || || || | ||| |||||| || |||||||| ||||| Sbjct 760212 GCCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 760271 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || ||| |||| | ||||||||||| || || Sbjct 760272 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGG 760331 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| | | || ||||| | || | ||||| | ||||| | Sbjct 760332 GATACCCTCCTTGTC-CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCA 760390 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | ||| || || || |||||||| Sbjct 760391 CTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 760439 >seq7 Length=2824016 Score = 138 bits (152), Expect = 1e-27 Identities = 348/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | |||||||| || ||||||||| | || | | Sbjct 1202906 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 1202965 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | || || |||| | || |||||||| || ||||| |||| || || Sbjct 1202966 TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCC 1203025 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||||| ||||||| | |||| | | || ||||||| |||||||| || |||| Sbjct 1203026 TTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAAC 1203085 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322 ||||| || || || |||||||| ||||| || |||||||| || || || | || | Sbjct 1203086 GAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCC----ACTC 1203141 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGGC 46376 || | || | || ||||| | || | | | | | || ||| || || Sbjct 1203142 TCACCTGAAGAACC-----GCGCCAG-CAAGGAGATTATCCGTGAAATCATCACTGATGC 1203195 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 || || ||| | || || || || | || || ||| ||| |||||||||||||| Sbjct 1203196 CGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAA 1203255 Query 46437 CGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC 46495 ||| || | ||| | ||||| |||||||| || || || |||||||| ||| Sbjct 1203256 CGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTG 1203314 Query 46496 ACCAGCCGAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 | | |||| |||| || | | | || || ||||| || ||| | |||||||||||| Sbjct 1203315 GCAACGAGAAG-ATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTG 1203373 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||||| || || || ||||| ||||| ||||||||||| Sbjct 1203374 GGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 1203414 >seq1 Length=7294945 Score = 131 bits (144), Expect = 2e-25 Identities = 908/1441 (63%), Gaps = 37/1441 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | ||||| ||| || | ||| || ||| |||| Sbjct 1234089 TTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 1234030 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | || || ||||||||||| || | || | || ||||||||| || || Sbjct 1234029 TCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACG 1233970 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| | ||||||| ||| || | ||||| |||| |||| ||||| Sbjct 1233969 AGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCAC 1233910 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG-GCT 145296 || ||| ||| | || ||||||| ||| |||| | |||||| || |||||| | | Sbjct 1233909 AGGTCAGTGGGCTTGACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGAT 1233850 Query 145297 GCCTTGAAAGGAACT-GTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 ||||||| | ||| ||| ||| | ||||| | ||| | ||||| || | Sbjct 1233849 CCCTTGAATG--ACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCCTCGAGGG 1233792 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC-----AGCATCGCTTCATCGCT 145410 | || || || ||||| |||||| |||| | | ||| ||| | || Sbjct 1233791 CAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGAT---- 1233736 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 ||| | || | ||||| | ||||| || || || ||||| | || || || || Sbjct 1233735 -TCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAAT 1233677 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGA 145529 ||| || || |||| || | | ||| || | || || | | | || |||| Sbjct 1233676 GGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCAC-ATCGA 1233618 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | || || | ||| || || || ||||| |||| | | | ||| | ||||||| Sbjct 1233617 TGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCAT 1233558 Query 145590 ACCGAGCC-TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 | | |||| |||| | | | ||| || | || || | || ||||| || || || Sbjct 1233557 AGC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACA 1233499 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 || ||| || | | | ||| | |||||||| | ||| | ||| | | |||| Sbjct 1233498 GCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATG 1233439 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 |||||||| || | ||| || || || | |||||| || |||||||| ||||| | || Sbjct 1233438 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGG 1233379 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 |||||||| ||| | ||| | ||| | || | ||| || || | | Sbjct 1233378 TTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGA--TAG 1233321 Query 145829 TGCTGGTAGC--GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | || | | |||||| | ||||| ||| || || |||| || | || | Sbjct 1233320 TCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCAT 1233261 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 |||| || | ||||| || || | |||||| ||||||| | ||| | ||| | Sbjct 1233260 AGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCT 1233201 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 || |||| ||| |||| ||| || | ||| || ||| | || ||| || || | Sbjct 1233200 CAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGA 1233141 Query 146007 AATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCA 146064 || || || ||| | || | | ||| | ||| | ||| || |||||||| Sbjct 1233140 CCTCTTCCTTGCCGTGGTTCTTGC-GGAGGTCAAGGA-ACTCAAAGACATCGGCGTGCCA 1233083 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121 || || | |||| ||| | ||| || || |||||||||||||| |||| | Sbjct 1233082 AGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCT 1233023 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 | ||||||| ||||| || | |||||| || ||| ||| ||||| || Sbjct 1233022 GGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCC 1232963 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240 | || | ||| | || | | || || |||| ||||| ||| || ||| | Sbjct 1232962 GGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCAT 1232903 Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 |||||| || ||| || ||| || || |||||||| || |||||||| ||| | Sbjct 1232902 -CTTGGAAATCATGGCACATGTC-TTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1232845 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| | | ||| ||||| ||| ||| ||| || || || || || ||| | Sbjct 1232844 TTC--ATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGA 1232787 Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 || || || || ||||| | ||| | | ||| | | || || || | | Sbjct 1232786 GGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACAC 1232727 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | ||||| ||| || || ||| | ||| || ||||| | |||||| || || |||| Sbjct 1232726 GCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCT 1232667 Query 146478 C 146478 | Sbjct 1232666 C 1232666 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||| || ||||| ||||||||||| ||| ||| Sbjct 2968755 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 2968814 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||| ||||| |||||||| || ||||| ||| || ||||| | | Sbjct 2968815 TCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 2968874 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 2968875 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 2968934 Query 131225 AA 131226 || Sbjct 2968935 AA 2968936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012664296320