Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 197 2e-45 >seq7 Length=2824016 Score = 197 bits (218), Expect = 2e-45 Identities = 488/729 (67%), Gaps = 15/729 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || |||||||| ||||| ||||| || || ||| | || Sbjct 1203295 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA-GCAC 1203237 Query 92986 AGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| ||||| ||||||||||| |||| ||||||| ||||| || | | |||||| Sbjct 1203236 AGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCAC 1203177 Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||| || ||| | | || | | | | | | | || ||| ||||||| Sbjct 1203176 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 1203120 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 |||| || | ||| ||||| || || || | ||| ||| ||| || | || || | | Sbjct 1203119 CGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 1203060 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | |||| ||||||||||| || || || ||||| || || || ||||| || | Sbjct 1203059 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGA 1203000 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTT 93280 |||| ||||| || |||| || | ||||| | | || | || |||||| || Sbjct 1202999 CGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTT-GTCCTGGATCCACTTG 1202941 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || || || ||||| | || || || ||||| || ||||| Sbjct 1202940 ATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 1202881 Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 | |||| | | | || | | ||| || ||||| | ||| || || | || || || Sbjct 1202880 TTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTG 1202822 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || ||||| |||||||| |||| ||| || | |||||| || || Sbjct 1202821 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 1202762 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || | ||| || || || || ||||| || || ||||| || ||||| ||||| Sbjct 1202761 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAAGC 1202702 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAG 93576 ||| || || || || | ||||| ||||| || | | || | ||| ||| || Sbjct 1202701 CAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 1202642 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| || || ||||| | |||||| | ||||| || || || || || ||||||||||| Sbjct 1202641 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 1202582 Query 93637 ATCCCATAT 93645 | ||| || Sbjct 1202581 TTGCCAGAT 1202573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860639902520