Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 1e-23
seq5 96.9 7e-15
seq1 89.7 1e-12
>seq7
Length=2824016
Score = 125 bits (138), Expect = 1e-23
Identities = 533/833 (64%), Gaps = 37/833 (4%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| |||| ||||| |||||||||||| |||||||| | |
Sbjct 1203396 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAG 1203337
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | |||||| || |||| | || || || |||||||| |
Sbjct 1203336 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATG 1203277
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||| | || | ||| || | ||||| | |
Sbjct 1203276 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAG 1203217
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT------TCACCTGTGCCAGA 251796
||||| | ||| | || || || | ||| | || ||| ||| |
Sbjct 1203216 AATTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACGGATAATCTCCT-TGCTGGC 1203158
Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853
| ||||| ||| | |||| ||||| || |||| | ||||||||||
Sbjct 1203157 GCG-----GTTCTTCAGGTGAGAGT---GGAGCAGGCAAGCAAAGTCGGTGTGCAGACCC 1203106
Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913
||||| ||| ||||| ||||||||| | |||||||||||| | || | ||| ||
Sbjct 1203105 TCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTG 1203046
Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973
||||||||||| | | ||||| ||| ||| | | ||||||||| | | |||
Sbjct 1203045 AGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCA 1202986
Query 251974 ACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCT 252027
|||||||||| |||||| || ||||||||| | |||| ||||| |
Sbjct 1202985 ACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG---GATCCACTTGATGGCCCAGTCA 1202929
Query 252028 GCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCA 252087
|||||||| | | || || || || || || | ||||| |||| |||| |
Sbjct 1202928 GCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTG 1202869
Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147
| |||| || | | || | || || ||||| |||| || |||||| || |
Sbjct 1202868 TGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATC 1202809
Query 252148 AACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACT-TCCGTGGAAAA 252203
| |||||| || | |||| || || | ||| || || | || ||| ||||
Sbjct 1202808 ATGATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTGAACCTCGCCGCTGAAAC 1202751
Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG-AAGCCAAGAATGG 252262
| | | | |||||| | || ||||| ||| | | |||||| |||||||| |||
Sbjct 1202750 G--CTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAAGCCAAG-ATGT 1202694
Query 252263 TCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGAT 252322
|||||||| ||| || ||||| || || ||||||| | ||||
Sbjct 1202693 GAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGG 1202634
Query 252323 TCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375
|||| || ||||| | |||||||| | | | | ||||| |||||||||
Sbjct 1202633 ACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATT 1202581
>seq5
Length=3842235
Score = 96.9 bits (106), Expect = 7e-15
Identities = 425/667 (64%), Gaps = 7/667 (1%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || |||||||||||||||||||| || | | || || || || |
Sbjct 2474684 GTCGGCTCGCTCTCTGGTGGTTGGAAGATGAAGCTCGCTTTGGCCCGAGCTATGCTCAAG 2474625
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||||||||||| || | || || || || ||||| | || | ||| | |||
Sbjct 2474624 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCATCTTGATGTTGCAAACATTGCC 2474565
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | ||| || | | | | || | | || || || ||||||
Sbjct 2474564 TGGCTTGAGAACTATCTCAAGACACACCCCGACATTACCAGTTTGATCGTGTCCCACGAC 2474505
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| |||||||| || ||| | ||| |||| || ||||||| || |||||||
Sbjct 2474504 TCCGGCTTCCTGGACAACGTCACCACTGACATCTACCATTATGAGCCCAACAAGAAGCTC 2474445
Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995
| ||| |||||||| |||| || || | | ||||| ||||| ||||
Sbjct 2474444 GCTTGCTACAAGGGCAACCTTGCTGCCTTTGTTGAACTTCGCCCCGAGGCCAAGAGCTAC 2474385
Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055
|| ||| || ||| | | ||| | |||||| || || || || ||
Sbjct 2474384 TACACCCTCTCGGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCCGGTATTTTGACTGGT 2474325
Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115
|| | || || || || ||||| | | |||||| || | ||||||||
Sbjct 2474324 ATTAAGTCTCAGACCCGTGCCATCATCCGTATGAGCAACGTCTCTTTCACCTATCCCAAG 2474265
Query 280116 GGCCCCAACATCTTCAG---CAG-TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTG 280170
| ||||| ||||| ||| |||| || || | ||| || |||||| | |
Sbjct 2474264 GCTCCCAAGC-CTTCACTCTCAGATGTCT-CTTGCTCTCTGTCTTTGTCCTCACGAGTAG 2474207
Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230
| ||||||||||||||||| || |||||||| | ||||| | || || || ||||
Sbjct 2474206 CCATTATTGGACCCAATGGTGCCGGCAAGTCTACTTTGATCAAGCTGCTTACCGGTGAGA 2474147
Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290
|| |||| | || || |||||| |||||| | || || | |||| || |
Sbjct 2474146 CCATTCCCACCGTCGGTAAGGTCGAGAAGCACCCCAACCTTCGAATTGGTTACATCAAGC 2474087
Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350
||||||| | | ||| | |||| ||||| || | |||||| ||||| || | ||||
Sbjct 2474086 AGCACGCCCTGGAGCACGTTGAGATGCACCTTGAGAAGACTCCCAACCAGTATCTGCAGT 2474027
Query 280351 GGCGCTA 280357
|||| ||
Sbjct 2474026 GGCGATA 2474020
>seq1
Length=7294945
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| || || || |||| ||||||||||| |||
Sbjct 761900 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 761841
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | |||||||||| | || |||||||| ||||||||| || |
Sbjct 761840 CAGACTCACCTGCGCCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 761781
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 761780 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 761722
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
|| || | ||| || | || |||||||| |||||||| ||
Sbjct 761721 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGATCTCGACTCCGCT 761676
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || || ||||| || || || ||| ||||| |||| | | ||
Sbjct 760498 CTCACTCGCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCTTGGCTGCTT 760439
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 760438 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 760380
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||||| ||||||
Sbjct 760379 GACTCTCTGGGTGCTCTG 760362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836497109343
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |