Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 seq5 96.9 7e-15 seq1 89.7 1e-12 >seq7 Length=2824016 Score = 125 bits (138), Expect = 1e-23 Identities = 533/833 (64%), Gaps = 37/833 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| |||||||||||| |||||||| | | Sbjct 1203396 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAG 1203337 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | |||||| || |||| | || || || |||||||| | Sbjct 1203336 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATG 1203277 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||| | || | ||| || | ||||| | | Sbjct 1203276 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAG 1203217 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT------TCACCTGTGCCAGA 251796 ||||| | ||| | || || || | ||| | || ||| ||| | Sbjct 1203216 AATTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACGGATAATCTCCT-TGCTGGC 1203158 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853 | ||||| ||| | |||| ||||| || |||| | |||||||||| Sbjct 1203157 GCG-----GTTCTTCAGGTGAGAGT---GGAGCAGGCAAGCAAAGTCGGTGTGCAGACCC 1203106 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| ||| ||||| ||||||||| | |||||||||||| | || | ||| || Sbjct 1203105 TCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTG 1203046 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973 ||||||||||| | | ||||| ||| ||| | | ||||||||| | | ||| Sbjct 1203045 AGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCA 1202986 Query 251974 ACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCT 252027 |||||||||| |||||| || ||||||||| | |||| ||||| | Sbjct 1202985 ACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG---GATCCACTTGATGGCCCAGTCA 1202929 Query 252028 GCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCA 252087 |||||||| | | || || || || || || | ||||| |||| |||| | Sbjct 1202928 GCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTG 1202869 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 | |||| || | | || | || || ||||| |||| || |||||| || | Sbjct 1202868 TGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATC 1202809 Query 252148 AACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACT-TCCGTGGAAAA 252203 | |||||| || | |||| || || | ||| || || | || ||| |||| Sbjct 1202808 ATGATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTGAACCTCGCCGCTGAAAC 1202751 Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG-AAGCCAAGAATGG 252262 | | | | |||||| | || ||||| ||| | | |||||| |||||||| ||| Sbjct 1202750 G--CTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAAGCCAAG-ATGT 1202694 Query 252263 TCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGAT 252322 |||||||| ||| || ||||| || || ||||||| | |||| Sbjct 1202693 GAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGG 1202634 Query 252323 TCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 |||| || ||||| | |||||||| | | | | ||||| ||||||||| Sbjct 1202633 ACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATT 1202581 >seq5 Length=3842235 Score = 96.9 bits (106), Expect = 7e-15 Identities = 425/667 (64%), Gaps = 7/667 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || |||||||||||||||||||| || | | || || || || | Sbjct 2474684 GTCGGCTCGCTCTCTGGTGGTTGGAAGATGAAGCTCGCTTTGGCCCGAGCTATGCTCAAG 2474625 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| || | || || || || ||||| | || | ||| | ||| Sbjct 2474624 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCATCTTGATGTTGCAAACATTGCC 2474565 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | ||| || | | | | || | | || || || |||||| Sbjct 2474564 TGGCTTGAGAACTATCTCAAGACACACCCCGACATTACCAGTTTGATCGTGTCCCACGAC 2474505 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||| | ||| |||| || ||||||| || ||||||| Sbjct 2474504 TCCGGCTTCCTGGACAACGTCACCACTGACATCTACCATTATGAGCCCAACAAGAAGCTC 2474445 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 | ||| |||||||| |||| || || | | ||||| ||||| |||| Sbjct 2474444 GCTTGCTACAAGGGCAACCTTGCTGCCTTTGTTGAACTTCGCCCCGAGGCCAAGAGCTAC 2474385 Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055 || ||| || ||| | | ||| | |||||| || || || || || Sbjct 2474384 TACACCCTCTCGGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCCGGTATTTTGACTGGT 2474325 Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115 || | || || || || ||||| | | |||||| || | |||||||| Sbjct 2474324 ATTAAGTCTCAGACCCGTGCCATCATCCGTATGAGCAACGTCTCTTTCACCTATCCCAAG 2474265 Query 280116 GGCCCCAACATCTTCAG---CAG-TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTG 280170 | ||||| ||||| ||| |||| || || | ||| || |||||| | | Sbjct 2474264 GCTCCCAAGC-CTTCACTCTCAGATGTCT-CTTGCTCTCTGTCTTTGTCCTCACGAGTAG 2474207 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 | ||||||||||||||||| || |||||||| | ||||| | || || || |||| Sbjct 2474206 CCATTATTGGACCCAATGGTGCCGGCAAGTCTACTTTGATCAAGCTGCTTACCGGTGAGA 2474147 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || |||| | || || |||||| |||||| | || || | |||| || | Sbjct 2474146 CCATTCCCACCGTCGGTAAGGTCGAGAAGCACCCCAACCTTCGAATTGGTTACATCAAGC 2474087 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||| | | ||| | |||| ||||| || | |||||| ||||| || | |||| Sbjct 2474086 AGCACGCCCTGGAGCACGTTGAGATGCACCTTGAGAAGACTCCCAACCAGTATCTGCAGT 2474027 Query 280351 GGCGCTA 280357 |||| || Sbjct 2474026 GGCGATA 2474020 >seq1 Length=7294945 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| || || || |||| ||||||||||| ||| Sbjct 761900 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 761841 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||||| | || |||||||| ||||||||| || | Sbjct 761840 CAGACTCACCTGCGCCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 761781 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 761780 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 761722 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 || || | ||| || | || |||||||| |||||||| || Sbjct 761721 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGATCTCGACTCCGCT 761676 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || || ||||| || || || ||| ||||| |||| | | || Sbjct 760498 CTCACTCGCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCTTGGCTGCTT 760439 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 760438 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 760380 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 760379 GACTCTCTGGGTGCTCTG 760362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836497109343