Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq6 170 4e-37
seq7 136 7e-27
seq1 109 1e-18
>seq6
Length=3085841
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || |||
Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | || || ||||| || |||
Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || |||||||| || |||||||| || |||||
Sbjct 760721 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 760780
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| || ||||| || || | || ||||| || |||
Sbjct 760781 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 760840
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||| || ||||| ||||| | || || ||
Sbjct 760841 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 760900
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| || |||||
Sbjct 760901 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 760947
>seq7
Length=2824016
Score = 136 bits (150), Expect = 7e-27
Identities = 558/868 (64%), Gaps = 25/868 (3%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||| |||||||| || || |||||||||||||| ||||||
Sbjct 1203435 TTCATGACACCGGCCTTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCG 1203376
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG-CGCCAAACTGCTTGGGGTA 10051
| ||||| ||| ||||||||||||||||||||| || | || | ||| ||
Sbjct 1203375 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAAT-CTTCTCGTT 1203317
Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111
|| || || || | || || || || ||||| |||||||| |||||||| |
Sbjct 1203316 GCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGC 1203257
Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171
||||||||| | || ||||||| || ||| | ||| || | ||| | |||
Sbjct 1203256 GTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGAC 1203197
Query 10172 CGCTTCCTCGACGAT---GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228
|| || || ||| | | | | | | || || ||||| || | ||
Sbjct 1203196 GGCATCAGTGATGATTTCACGGATAATCTCCTTGCTGG--CGC-GGTTCTTCAGGTGAGA 1203140
Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288
| || || |||| | ||| || |||||||| || ||||| |||||||||
Sbjct 1203139 GTGGAGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 1203080
Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348
|| ||| || |||||||| || | || |||||||| |||| | || | ||
Sbjct 1203079 GAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCC 1203020
Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408
| ||| | | |||||| ||| | |||| || ||||||| || ||||| |||
Sbjct 1203019 GCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTC 1202960
Query 10409 ---GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465
| | | | || |||||| | |||||||| | | | ||| || |||||
Sbjct 1202959 CTTGTCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTC 1202900
Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAA--TAAGAGCATCAAGGAGC 10523
|| || | |||||| | ||| |||| | | | |||| | || | | || | ||||
Sbjct 1202899 AATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTG--TCGATGAGC 1202842
Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582
|||||||| |||| ||||| | |||| | |||| || ||||||| ||| ||
Sbjct 1202841 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CG 1202783
Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642
||| |||| | || || || || | | ||||||||| | || |||||
Sbjct 1202782 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 1202723
Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701
||| | | |||||||| | | |||||| |||||||| ||| ||||||||||
Sbjct 1202722 GTCGGAGGCAGCAAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 1202663
Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758
||| || |||||| || ||||| | || | | ||| || |||||||||
Sbjct 1202662 GCGGTTGTT----CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGA 1202607
Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786
| | || ||||||| |||||||| ||
Sbjct 1202606 AGGAAGCCTCGGCCTTTTTGTACATTTG 1202579
>seq1
Length=7294945
Score = 109 bits (120), Expect = 1e-18
Identities = 661/1038 (64%), Gaps = 44/1038 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| ||||||||||||| ||||| ||| ||||||
Sbjct 760891 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGGTGGTTATCAATGTGGGCGAAAGCG 760950
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | || | ||| ||
Sbjct 760951 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCGCCAGTGGGG 761010
Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || ||| || || ||||| || |||| ||| || ||||| |||||||||||
Sbjct 761011 ATGAGC-TCACCGCAAAGAACGTTGATCAGGGTAGACTTTCCAGCACCGTTGGGGCCAAT 761069
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216
||| |||| || || || | ||| || | | | | ||| ||| ||
Sbjct 761070 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATTTCGGTGA---TCTGGGGCTT 761126
Query 225217 GCCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTT-CATGATGGCACGGTCCTTGG 225272
| ||| |||| |||| || | | ||| || |||||| | ||||||
Sbjct 761127 GGAAGTACCGGGGTACTGGAAGGACAT-CTTGGTAGCACGCAGGATGGCCTTGGCCTTGG 761185
Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332
| | |||||| ||||| |||||||||||||| ||| | || | | | | |
Sbjct 761186 TCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCAGAGGCACCAA 761245
Query 225333 GGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
| |||||||| || || || ||||| ||||| | |||||| ||
Sbjct 761246 GCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAACTCCTTCAGGTTACCAC 761302
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
||| | | ||||||| | || |||| ||||| || ||| | ||| || ||||
Sbjct 761303 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACGATGTGCTG-GCAGACGTTGTCA 761358
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA---G 225504
||||||| |||||||| || || |||||||| | || | | || |||| |
Sbjct 761359 AGGAAGCTTGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTGACAAG 761411
Query 225505 GTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563
|| || | |||||| ||||| | ||||||| |||||| ||||| ||||| ||||
Sbjct 761412 GTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCAAGAA 761470
Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623
||||||| || | | || || ||| || |||| |||||||| ||||| || |
Sbjct 761471 GCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 761530
Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGA 225680
| || || | | ||| | | | | | ||| |||||| |||| ||||
Sbjct 761531 CAGAAAGAGCGGAGATCTCACCCTGGACCATCTGCTCGGTGAAGCCGAACTCGTCCAGGC 761590
Query 225681 GCGTCTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739
|| ||| || | | || ||| || | | |||| || | | | |
Sbjct 761591 GCTTCTCGACA-TCAGCCTGGGTGACATTGACCTCGGCCTCGGCCAGCTTCTTCATGGTC 761649
Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799
| ||| |||||| || | | ||| | ||| | ||||| || ||| | || |||
Sbjct 761650 CACTCAATGGTGGTCATCTCAGTGTCAGCGGAGTCGAGATCGTGCTCAACGAAGACAGTC 761709
Query 225800 CGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858
|| | | || | |||||| ||||| | ||| | || || ||||| | ||
Sbjct 761710 TTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAG 761768
Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918
||| |||||| | |||||||||||| || || ||| | | || ||||||| |
Sbjct 761769 AGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCATAACGCTGACCACGCTTGAGGCG 761828
Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
||| | || ||| || || |||||| |||| |||||||| ||||| ||| | |||
Sbjct 761829 CAGGTGAGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCA 761888
Query 225979 CAGGTCCTCACCCTCCTC 225996
|||||||||||||||||
Sbjct 761889 AAGGTCCTCACCCTCCTC 761906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622135033560
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