Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 170 4e-37 seq7 136 7e-27 seq1 109 1e-18 >seq6 Length=3085841 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||| Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | || || ||||| || ||| Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 760721 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 760780 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 760781 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 760840 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||| ||||| | || || || Sbjct 760841 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 760900 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 760901 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 760947 >seq7 Length=2824016 Score = 136 bits (150), Expect = 7e-27 Identities = 558/868 (64%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| |||||||| || || |||||||||||||| |||||| Sbjct 1203435 TTCATGACACCGGCCTTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCG 1203376 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG-CGCCAAACTGCTTGGGGTA 10051 | ||||| ||| ||||||||||||||||||||| || | || | ||| || Sbjct 1203375 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAAT-CTTCTCGTT 1203317 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 || || || || | || || || || ||||| |||||||| |||||||| | Sbjct 1203316 GCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGC 1203257 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 ||||||||| | || ||||||| || ||| | ||| || | ||| | ||| Sbjct 1203256 GTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGAC 1203197 Query 10172 CGCTTCCTCGACGAT---GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || || || ||| | | | | | | || || ||||| || | || Sbjct 1203196 GGCATCAGTGATGATTTCACGGATAATCTCCTTGCTGG--CGC-GGTTCTTCAGGTGAGA 1203140 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | || || |||| | ||| || |||||||| || ||||| ||||||||| Sbjct 1203139 GTGGAGCAGGCAAGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 1203080 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| || |||||||| || | || |||||||| |||| | || | || Sbjct 1203079 GAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCC 1203020 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408 | ||| | | |||||| ||| | |||| || ||||||| || ||||| ||| Sbjct 1203019 GCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTC 1202960 Query 10409 ---GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | | | || |||||| | |||||||| | | | ||| || ||||| Sbjct 1202959 CTTGTCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTC 1202900 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAA--TAAGAGCATCAAGGAGC 10523 || || | |||||| | ||| |||| | | | |||| | || | | || | |||| Sbjct 1202899 AATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTG--TCGATGAGC 1202842 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582 |||||||| |||| ||||| | |||| | |||| || ||||||| ||| || Sbjct 1202841 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CG 1202783 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| | || || || || | | ||||||||| | || ||||| Sbjct 1202782 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 1202723 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 ||| | | |||||||| | | |||||| |||||||| ||| |||||||||| Sbjct 1202722 GTCGGAGGCAGCAAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 1202663 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || |||||| || ||||| | || | | ||| || ||||||||| Sbjct 1202662 GCGGTTGTT----CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGA 1202607 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | || ||||||| |||||||| || Sbjct 1202606 AGGAAGCCTCGGCCTTTTTGTACATTTG 1202579 >seq1 Length=7294945 Score = 109 bits (120), Expect = 1e-18 Identities = 661/1038 (64%), Gaps = 44/1038 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| ||||||||||||| ||||| ||| |||||| Sbjct 760891 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGGTGGTTATCAATGTGGGCGAAAGCG 760950 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || | ||| || Sbjct 760951 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCGCCAGTGGGG 761010 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| || || ||||| || |||| ||| || ||||| ||||||||||| Sbjct 761011 ATGAGC-TCACCGCAAAGAACGTTGATCAGGGTAGACTTTCCAGCACCGTTGGGGCCAAT 761069 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216 ||| |||| || || || | ||| || | | | | ||| ||| || Sbjct 761070 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATTTCGGTGA---TCTGGGGCTT 761126 Query 225217 GCCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTT-CATGATGGCACGGTCCTTGG 225272 | ||| |||| |||| || | | ||| || |||||| | |||||| Sbjct 761127 GGAAGTACCGGGGTACTGGAAGGACAT-CTTGGTAGCACGCAGGATGGCCTTGGCCTTGG 761185 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| |||||||||||||| ||| | || | | | | | Sbjct 761186 TCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCAGAGGCACCAA 761245 Query 225333 GGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 | |||||||| || || || ||||| ||||| | |||||| || Sbjct 761246 GCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAACTCCTTCAGGTTACCAC 761302 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| ||||| || ||| | ||| || |||| Sbjct 761303 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACGATGTGCTG-GCAGACGTTGTCA 761358 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA---G 225504 ||||||| |||||||| || || |||||||| | || | | || |||| | Sbjct 761359 AGGAAGCTTGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTGACAAG 761411 Query 225505 GTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 || || | |||||| ||||| | ||||||| |||||| ||||| ||||| |||| Sbjct 761412 GTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCAAGAA 761470 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || | | || || ||| || |||| |||||||| ||||| || | Sbjct 761471 GCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 761530 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGA 225680 | || || | | ||| | | | | | ||| |||||| |||| |||| Sbjct 761531 CAGAAAGAGCGGAGATCTCACCCTGGACCATCTGCTCGGTGAAGCCGAACTCGTCCAGGC 761590 Query 225681 GCGTCTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739 || ||| || | | || ||| || | | |||| || | | | | Sbjct 761591 GCTTCTCGACA-TCAGCCTGGGTGACATTGACCTCGGCCTCGGCCAGCTTCTTCATGGTC 761649 Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799 | ||| |||||| || | | ||| | ||| | ||||| || ||| | || ||| Sbjct 761650 CACTCAATGGTGGTCATCTCAGTGTCAGCGGAGTCGAGATCGTGCTCAACGAAGACAGTC 761709 Query 225800 CGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858 || | | || | |||||| ||||| | ||| | || || ||||| | || Sbjct 761710 TTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAG 761768 Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918 ||| |||||| | |||||||||||| || || ||| | | || ||||||| | Sbjct 761769 AGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCATAACGCTGACCACGCTTGAGGCG 761828 Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 ||| | || ||| || || |||||| |||| |||||||| ||||| ||| | ||| Sbjct 761829 CAGGTGAGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCA 761888 Query 225979 CAGGTCCTCACCCTCCTC 225996 ||||||||||||||||| Sbjct 761889 AAGGTCCTCACCCTCCTC 761906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622135033560