Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 370 2e-97 seq1 343 3e-89 >seq7 Length=2824016 Score = 370 bits (410), Expect = 2e-97 Identities = 603/855 (71%), Gaps = 20/855 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||| Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 1202691 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| |||| ||||| || ||||| |||||||| ||||| |||||||||| | | Sbjct 1202692 TCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 1202751 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || ||||||||||| |||||||| || Sbjct 1202752 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 1202811 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| ||| || ||| | Sbjct 1202812 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACGTCAAGGAGCA 1202868 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| ||| || ||||| ||||| ||||| || || |||||| |||||||| Sbjct 1202869 CAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGC 1202928 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| |||| |||||| || ||| | | || | || | || || || Sbjct 1202929 TGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGC 1202988 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||||| Sbjct 1202989 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 1203048 Query 42773 GCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | ||| |||| || ||||| || || |||||||| ||||| |||||| | ||||||| Sbjct 1203049 GAAGAGAGGTCTC-ATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 1203107 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | |||||||| ||||| || ||| ||||| | | || || | Sbjct 1203108 GTCTGCACACCGACTTTGCTTGCCTGCTCCACTC---TCACCTGAAGAACCGCGCCAGCA 1203164 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||||| |||| | |||||||| || ||||| |||||| | || ||| | || Sbjct 1203165 AGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCG 1203224 Query 42952 AGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||| | ||| | ||||||||| | ||| ||| ||||||| || Sbjct 1203225 AGGCTCTCCCCTGTG-CTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAG 1203283 Query 43011 TACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 | || ||||| | ||| || || | ||| || | | ||||| | | Sbjct 1203284 TTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAG-ATTTACAAGTCCTCCAA 1203342 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct 1203343 CCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCG 1203402 Query 43130 CGTCGCCGACTACCA 43144 |||| ||| ||||| Sbjct 1203403 TGTCGGCGAGTACCA 1203417 >seq1 Length=7294945 Score = 343 bits (380), Expect = 3e-89 Identities = 1149/1767 (65%), Gaps = 67/1767 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| ||||| | || |||| ||| | ||||||||||||||| |||||||| | Sbjct 1234427 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1234368 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| | || ||||||| || | ||| ||| | |||| | Sbjct 1234367 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGGA--T 1234317 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| | ||||||| ||| || | ||| | | || || || | Sbjct 1234316 CCTT---CATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTG 1234260 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 ||| || || || |||||| ||||| | | |||||||| | || ||||| || Sbjct 1234259 ACATCTGGACGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGT 1234200 Query 243981 GCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 |||| || | || ||||||| | || || || | | |||| || | | Sbjct 1234199 CGGCGGG-AATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTC 1234141 Query 244040 ATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094 || |||| ||| ||||| | || | || ||| || ||||| | || | Sbjct 1234140 ATAGCATCGGACCAGAGGCCAGTATCGA-CAAGATCCTTGAGAAGCCAGGGG----TTGA 1234086 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || || |||||||||| |||| | || ||||||| Sbjct 1234085 CAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 1234026 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || || |||||||||| ||||| | ||||| ||||| |||||||| | || |||| Sbjct 1234025 AGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCA 1233966 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 |||||| | | |||||| || || | ||||| || ||| ||||||| | Sbjct 1233965 AACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 1233906 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 | || || | |||| |||||| ||||||||| || | || | | || | Sbjct 1233905 C--AGTGGGC-------TTGACATCCCACAAGTCAAACTGGAGAATGCCTT--CAGAGGC 1233857 Query 244335 GGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGT 244391 || || |||| | | | | || ||||| ||| || ||| | || | || | | | Sbjct 1233856 GGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCC-T 1233798 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 ||||||| |||| |||||||||||| ||||| |||||||| ||||| || | | Sbjct 1233797 CGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTG 1233738 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | ||| || | | || | ||| |||| || || ||||| || || | || | Sbjct 1233737 ATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAA 1233678 Query 244512 TGGGTCTGTGTCGCTTGTT---GGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 |||||| ||| || |||| | ||| || || | |||||||| |||| | | Sbjct 1233677 TGGGTCGGTGGCGGCTGTTACTGTTGCGA---GCCTCCTGAACGGGGTAGTAGTTCACAT 1233621 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | ||||||||| ||| | || | || ||| ||| || ||||| Sbjct 1233620 CGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGT 1233561 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTG 244687 | || | | ||| | || || || ||||| | ||| || | | Sbjct 1233560 CATA-------GCAGCCT------TCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAG 1233514 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||||||||| || ||||| || | | | ||||| || ||||| ||||||||| Sbjct 1233513 GCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGG 1233454 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| ||||||| || || ||| |||| ||||||||| |||||| Sbjct 1233453 TTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTG 1233394 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| || ||||| |||||| | |||| | || ||| || | | Sbjct 1233393 TAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTC 1233334 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| || ||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 1233333 TGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCG 1233274 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 || || ||| || || | ||||| ||||| || | |||||||| | | ||| Sbjct 1233273 AATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATCAAAGTCC 1233216 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | | || || | || |||||| || || ||||||||||| || |||| | Sbjct 1233215 AGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACA 1233156 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| ||| ||| |||||| | || || | || ||||||| Sbjct 1233155 GGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGA 1233096 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | ||| ||||||| ||||| | ||||| || | ||| || || ||||||||||| |||| Sbjct 1233095 CATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCT 1233036 Query 245166 GGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 |||| || || | || | |||||||| || || | || | || ||||| ||| Sbjct 1233035 GGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAG 1232977 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCT 245284 ||||||||||| ||||| | |||| | | | || | || | || ||| Sbjct 1232976 GTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCG 1232917 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || || || |||||| || | ||| || |||| | ||||| || ||||| Sbjct 1232916 ATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCA 1232857 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTGCA 245403 |||||||| |||||||| | ||| ||||| |||||||||| | ||||| ||| | | Sbjct 1232856 ATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCTTGTGGGGTACC 1232798 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGT 245463 | |||||| || ||||| ||| ||||||||| | ||| || | || ||| || Sbjct 1232797 AGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGT 1232738 Query 245464 CTGGAGCAGAGCGTCGATGTTGTCGCC 245490 || || | | || |||||||| || Sbjct 1232737 CTCAAGGACACGCTCAATGTTGTCTCC 1232711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338928502480