Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 2e-22
seq1 87.8 4e-12
>seq7
Length=2824016
Score = 122 bits (134), Expect = 2e-22
Identities = 372/565 (66%), Gaps = 9/565 (2%)
Strand=Plus/Plus
Query 243197 AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAAT 243256
|||| ||| | || ||| ||||||| || | |||||| | | ||| ||||| | |
Sbjct 1202874 AGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGACT 1202933
Query 243257 GGGCTCAGAAGTGGCT--AGAACCCGGTAAAT-CATTTGCTGAGCGTCTCGTCGCCTGGG 243313
|||| |||||| | || || || | | |||||| |||| || || |||| |
Sbjct 1202934 GGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTG 1202993
Query 243314 TGTGCGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTTGGCTGCGGAA 243371
||| || ||||| || | ||| | |||| | ||| ||||||| ||||| |||
Sbjct 1202994 CTGCCGTCGAGGGTAT-CT-TCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 1203051
Query 243372 CAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCT 243431
| |||| | ||||||||||| | || |||||| ||||| ||| |||||||| ||
Sbjct 1203052 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 1203111
Query 243432 TCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA-GCTACCATTCGAAA 243490
||| | || | | || | | || | || ||||| || | || || |
Sbjct 1203112 GCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAG-GAGA 1203170
Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTA 243550
|| |||||||||| || || || || ||| | |||||| | ||| |||
Sbjct 1203171 TTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTC 1203230
Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610
| || || || | ||||||||| | || ||| |||||||| || || || |
Sbjct 1203231 TCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTG 1203290
Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670
|||| || | || |||| ||||| | ||||| | ||||| ||| ||||||||||
Sbjct 1203291 CCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTG 1203350
Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTG 243730
||| |||||| ||| || || || || || ||||||||||| ||||||||| | |
Sbjct 1203351 ACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCG 1203410
Query 243731 ATTATCAACGCCCTGGTGTGATGAA 243755
| || ||| | ||||| |||||
Sbjct 1203411 AGTACCAAAAGGCCGGTGTCATGAA 1203435
>seq1
Length=7294945
Score = 87.8 bits (96), Expect = 4e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856
|| ||||| |||||||| ||||| || ||| || | ||| || ||| || ||
Sbjct 1233671 CGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTCCT 1233730
Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916
||||| ||| | ||||| | || | ||| ||||||| || |||||| ||||
Sbjct 1233731 TTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCT 1233790
Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976
|| | || ||||| || || | || ||||| | ||||||||| ||||| | ||
Sbjct 1233791 GCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGA 1233850
Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCA 319022
|| ||||| ||||||| || |||| |||||||||||||||
Sbjct 1233851 TCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCA 1233896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879674995050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |