Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq1 87.8 4e-12 >seq7 Length=2824016 Score = 122 bits (134), Expect = 2e-22 Identities = 372/565 (66%), Gaps = 9/565 (2%) Strand=Plus/Plus Query 243197 AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAAT 243256 |||| ||| | || ||| ||||||| || | |||||| | | ||| ||||| | | Sbjct 1202874 AGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGACT 1202933 Query 243257 GGGCTCAGAAGTGGCT--AGAACCCGGTAAAT-CATTTGCTGAGCGTCTCGTCGCCTGGG 243313 |||| |||||| | || || || | | |||||| |||| || || |||| | Sbjct 1202934 GGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTG 1202993 Query 243314 TGTGCGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTTGGCTGCGGAA 243371 ||| || ||||| || | ||| | |||| | ||| ||||||| ||||| ||| Sbjct 1202994 CTGCCGTCGAGGGTAT-CT-TCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 1203051 Query 243372 CAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCT 243431 | |||| | ||||||||||| | || |||||| ||||| ||| |||||||| || Sbjct 1203052 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 1203111 Query 243432 TCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA-GCTACCATTCGAAA 243490 ||| | || | | || | | || | || ||||| || | || || | Sbjct 1203112 GCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAG-GAGA 1203170 Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTA 243550 || |||||||||| || || || || ||| | |||||| | ||| ||| Sbjct 1203171 TTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTC 1203230 Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610 | || || || | ||||||||| | || ||| |||||||| || || || | Sbjct 1203231 TCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTG 1203290 Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 |||| || | || |||| ||||| | ||||| | ||||| ||| |||||||||| Sbjct 1203291 CCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTG 1203350 Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTG 243730 ||| |||||| ||| || || || || || ||||||||||| ||||||||| | | Sbjct 1203351 ACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCG 1203410 Query 243731 ATTATCAACGCCCTGGTGTGATGAA 243755 | || ||| | ||||| ||||| Sbjct 1203411 AGTACCAAAAGGCCGGTGTCATGAA 1203435 >seq1 Length=7294945 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856 || ||||| |||||||| ||||| || ||| || | ||| || ||| || || Sbjct 1233671 CGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTCCT 1233730 Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916 ||||| ||| | ||||| | || | ||| ||||||| || |||||| |||| Sbjct 1233731 TTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCT 1233790 Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976 || | || ||||| || || | || ||||| | ||||||||| ||||| | || Sbjct 1233791 GCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGA 1233850 Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCA 319022 || ||||| ||||||| || |||| ||||||||||||||| Sbjct 1233851 TCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCA 1233896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879674995050