Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 3e-23
>seq6
Length=3085841
Score = 123 bits (136), Expect = 3e-23
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| ||||||||||| || || ||||| || ||| || || |||| ||
Sbjct 760231 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 760290
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||||||||||||||| ||||| ||||||||||| | || | | |||||||||| ||
Sbjct 760291 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC-TG 760349
Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
| | |||| |||| ||| | | | || || || ||||| || | ||||| || |
Sbjct 760350 AATCTTTGACTTGA-CGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCT 760408
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| || | ||||| |||||||| |||||
Sbjct 760409 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 760439
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | |||||| || | || || || ||||| ||||||||
Sbjct 760756 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 760815
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | || |||||||||| ||| || || | |
Sbjct 760816 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 760875
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| || ||||| |||| |||||||| ||||| || || ||||| ||
Sbjct 760876 GTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 760935
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 760936 GAAGATTTGCAT 760947
Score = 104 bits (114), Expect = 3e-17
Identities = 133/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| ||| || || |||| || |||||||||||||| ||
Sbjct 760476 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 760535
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||||| || | | |||||||||| ||| || |||| |||
Sbjct 760536 GATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 760594
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || ||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 760595 TGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTGA 760654
Query 42196 C 42196
|
Sbjct 760655 C 760655
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||| || | ||| |||||| || || ||||| || ||| || || |
Sbjct 1398493 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1398434
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||||||||| || || | |||||||||||| | || | || |||||||
Sbjct 1398433 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1398374
Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || |||| ||| | | | |||||| || ||||| || | |||||
Sbjct 1398373 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 1398315
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || ||||| || ||||| || || || ||||| ||
Sbjct 1398314 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1398276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212643826320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |