Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 282 4e-71 >seq1 Length=7294945 Score = 282 bits (312), Expect = 4e-71 Identities = 1082/1676 (65%), Gaps = 46/1676 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| ||| || ||||| ||| | |||||| Sbjct 1232597 AACTACCAATACTTCGGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGC 1232656 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||||| || || || | ||||| || || | || || || || Sbjct 1232657 AAGATTGTTGAGCGACCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGAC 1232716 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| | ||| | | | | | |||| ||| | |||| ||| Sbjct 1232717 AACATTGAGCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCC 1232776 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||||| |||||||| || ||||| | ||| |||| || || |||||| || Sbjct 1232777 TCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTG 1232836 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| |||| ||| || || | ||||| || ||| ||||| | || Sbjct 1232837 GACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATT 1232896 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCT 94072 || || || || || ||||| | | |||||| |||| ||||| | ||| || | Sbjct 1232897 TCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCAC--CGTATCCGTGCTACGGGCTCTT 1232954 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| ||| ||||| || ||||||||||| || |||| ||||| || |||||||||| Sbjct 1232955 ACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACA 1233014 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | ||||| ||||||||||| | | | ||| | || || |||| | Sbjct 1233015 ACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACC 1233074 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || || | ||| | ||||| || |||||||||||||| | Sbjct 1233075 TCGAGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGG 1233134 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | ||| | ||||| ||| |||||||||| | || || || || ||||| | Sbjct 1233135 AAGAGGTCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGC 1233194 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| |||| | ||||| | | | || ||||| ||||| || || || | | Sbjct 1233195 GTGTTGAGAAGAACTTGGACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTG 1233254 Query 94373 ACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || | ||| || | || || || |||||| ||||| | ||||||||| Sbjct 1233255 ACTGCTATGG--CGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGG 1233312 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| ||| ||| |||||||||| | ||| | || | ||| ||||| Sbjct 1233313 TCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGAC 1233372 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 |||| |||| || | | |||||| | |||| |||| ||||||| || |||| Sbjct 1233373 TGGTAACCCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCT 1233432 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || ||| ||||| || || ||||| ||||| || ||||| || | || ||||| Sbjct 1233433 GGGAACCATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGA 1233492 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | ||||| || ||| ||| ||| | || | | || || ||| ||| | Sbjct 1233493 GGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGT-CGA-----CTATA- 1233545 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGA 94729 | | ||| | | || | || ||||| || || | | || | ||| | Sbjct 1233546 -ACGAAGGCTGC-TATGACTTTAAGAAGCTTCACGATGTTACCAAGGTGG-TTGTCCGTA 1233602 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| ||| | | ||||| ||||| ||||||||| | |||||| ||| ||| Sbjct 1233603 ACCTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACA 1233662 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || ||||| || | || || |||||| | || ||||| | | ||| Sbjct 1233663 GCCGCCACCGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGC 1233722 Query 94850 GTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 |||| || | ||| || ||| || ||| | ||||| | | || || || | ||| Sbjct 1233723 GTCTTCCTTTCGAATCACCCGAAGCTCGCGAG-TTGAACAAGCAAATCTTTGAGACCATC 1233781 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || ||| ||| | | ||| | | ||| | |||| || || || | || Sbjct 1233782 TACCACGCTGCCCTCGAGGCATCTATGGAGATTGCCAAGAT----CGAGGGTCCTTATGA 1233837 Query 94968 ATCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 || ||| ||||| | ||| ||| |||||| | ||||| ||| | |||| ||| Sbjct 1233838 GTCATTCAAGGGATCACCCGCCTCTGAA---GGCATTCTCCAGTTTGACTTGTGGGATGT 1233894 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGT 95082 |||||| | | |||| || ||||| |||| | | || || ||| | |||||| Sbjct 1233895 CAAGCCCACTGACCTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TTAAGGAGCACGGT 1233952 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 | ||| |||| || |||||||||||||| ||| ||| | |||||||| ||| Sbjct 1233953 ATTCGCAACAGTTTGCTCGTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTGGGC 1234012 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 ||||| || | ||||| |||| |||||||||| | ||| | | || || || || || Sbjct 1234013 AACAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGC 1234072 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGG 95261 || |||| || ||||| || || | || | || || || || | ||| Sbjct 1234073 GAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACT-GGCCTCTGGTC 1234131 Query 95262 TGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || | ||||||| | |||| | ||||| || |||||||||| || Sbjct 1234132 CGATGCTATGAAGAACCGCATCATTGCT----GAGAACGGTTCTATCCAGAACATTCCCA 1234187 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || | ||||||||||| || |||||||| || ||||||||| | |||||| Sbjct 1234188 ACATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCGC 1234243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723057767080