Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7 167 2e-36
seq6 113 4e-20
>seq7
Length=2824016
Score = 167 bits (184), Expect = 2e-36
Identities = 507/769 (66%), Gaps = 37/769 (5%)
Strand=Plus/Plus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | ||||| ||||| || ||| |||| ||
Sbjct 1202666 AACGATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGC 1202725
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGG-AACGTTCCGGAACTCGAGGCGCA 52204
|| || ||| ||||| ||||| | |||||| | |||| | | |||||| |
Sbjct 1202726 ATTGTCAACGAGAACCTGGTCGAG-CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCG 1202784
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
|| ||| || ||| || | | || ||| | | ||| | |||| ||| |||||
Sbjct 1202785 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 1202844
Query 52265 CATTGAGCAGCTGATAAAAGATGAGCA---CGAGCGCGACACGCTGCTGAATGCGTTCGA 52321
||| || || || ||| ||||| | ||||| || || | || || | ||
Sbjct 1202845 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 1202901
Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381
| | | || ||| | || || |||||| | ||||| || ||||||||| || | |
Sbjct 1202902 GACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGA 1202961
Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
| | | | || ||||| | || ||||| || |||||||| | || || |||
Sbjct 1202962 CTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 1203021
Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501
||||||| ||||||| | | || | || ||| | ||||| |||||||| |||
Sbjct 1203022 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTC 1203081
Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT- 52557
||||||| | || || || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 1203082 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCCACTC 1203141
Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611
|| |||| |||| | | | ||| | |||| ||| || |||
Sbjct 1203142 TCACCTGAAGAACCGCGCCAGCAA------------GGAGATTATCCGTGA-AATCATCA 1203188
Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671
|| || || ||||| | || || || || | || || || | |||||||
Sbjct 1203189 CTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGG 1203248
Query 52672 GCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730
|||||||||| || | ||| ||||||| |||||||| || ||||||||| | ||
Sbjct 1203249 GCATGAACGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGT- 1203306
Query 52731 CAGCTC-GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788
|||| |||| | | ||| | ||| | ||| || ||||| || ||| | ||||
Sbjct 1203307 -CGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACA 1203365
Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || || | |||||||||||||| ||||||||||| |||||||||||
Sbjct 1203366 TCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 1203414
>seq6
Length=3085841
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || |||||||||||||||
Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || ||||| | | |||| | ||||| |||||||| ||
Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||||| |||||||||
Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||| || || || || || || || |||||||||||
Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279
Score = 105 bits (116), Expect = 7e-18
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||||||||| || || |
Sbjct 760754 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 760813
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| ||||| ||||| || || || ||||| ||| || || | |
Sbjct 760814 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 760873
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| ||||||||||||| || | || || || || || || ||
Sbjct 760874 TTG-TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 760932
Query 138600 TACAAAAATCTGCATGG 138616
|| || || |||||||
Sbjct 760933 GACGAAGATTTGCATGG 760949
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || ||| || || || ||||| | |
Sbjct 760248 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 760307
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| || ||||| ||||| || || ||||| || ||||| ||| | |||| || | |
Sbjct 760308 GATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACGT 760366
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | ||| || | |||||||| || | || | || || || |||| ||| ||
Sbjct 760367 TG-TCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTG 760425
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 760426 ACAAAGATCTGCAT 760439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262257324560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |