Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 167 2e-36 seq6 113 4e-20 >seq7 Length=2824016 Score = 167 bits (184), Expect = 2e-36 Identities = 507/769 (66%), Gaps = 37/769 (5%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | ||||| ||||| || ||| |||| || Sbjct 1202666 AACGATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGC 1202725 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGG-AACGTTCCGGAACTCGAGGCGCA 52204 || || ||| ||||| ||||| | |||||| | |||| | | |||||| | Sbjct 1202726 ATTGTCAACGAGAACCTGGTCGAG-CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCG 1202784 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || ||| || | | || ||| | | ||| | |||| ||| ||||| Sbjct 1202785 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 1202844 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCA---CGAGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || ||| ||||| | ||||| || || | || || | || Sbjct 1202845 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 1202901 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| | || || |||||| | ||||| || ||||||||| || | | Sbjct 1202902 GACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGA 1202961 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | || ||||| | || ||||| || |||||||| | || || ||| Sbjct 1202962 CTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 1203021 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | || ||| | ||||| |||||||| ||| Sbjct 1203022 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTC 1203081 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT- 52557 ||||||| | || || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 1203082 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCTTGCCTGCTCCACTC 1203141 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611 || |||| |||| | | | ||| | |||| ||| || ||| Sbjct 1203142 TCACCTGAAGAACCGCGCCAGCAA------------GGAGATTATCCGTGA-AATCATCA 1203188 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 || || || ||||| | || || || || | || || || | ||||||| Sbjct 1203189 CTGATGCCGTCAGAATCGAGCAAGAATTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGG 1203248 Query 52672 GCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 |||||||||| || | ||| ||||||| |||||||| || ||||||||| | || Sbjct 1203249 GCATGAACGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGT- 1203306 Query 52731 CAGCTC-GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788 |||| |||| | | ||| | ||| | ||| || ||||| || ||| | |||| Sbjct 1203307 -CGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACA 1203365 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || || | |||||||||||||| ||||||||||| ||||||||||| Sbjct 1203366 TCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 1203414 >seq6 Length=3085841 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||||||| Sbjct 1398505 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1398446 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||| | | |||| | ||||| |||||||| || Sbjct 1398445 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1398386 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 1398385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1398326 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || || || || ||||||||||| Sbjct 1398325 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 760754 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 760813 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 760814 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 760873 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||||||||||| || | || || || || || || || Sbjct 760874 TTG-TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 760932 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 760933 GACGAAGATTTGCATGG 760949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || ||| || || || ||||| | | Sbjct 760248 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 760307 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| ||||| || || ||||| || ||||| ||| | |||| || | | Sbjct 760308 GATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACGT 760366 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | |||||||| || | || | || || || |||| ||| || Sbjct 760367 TG-TCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTG 760425 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 760426 ACAAAGATCTGCAT 760439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262257324560