Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 2e-25
seq1 118 1e-21
>seq6
Length=3085841
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||| |||||||| |||||
Sbjct 760756 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 760815
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || |||||||||| |||||| ||| | |
Sbjct 760816 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 760875
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | |||||||| ||||| || || || || ||
Sbjct 760876 GTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 760935
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 760936 GAAGATTTGCAT 760947
Score = 122 bits (134), Expect = 1e-22
Identities = 161/221 (73%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||| || ||||| |
Sbjct 1398493 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1398434
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| || || || ||||| ||||||||||| | || | || |||||||
Sbjct 1398433 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1398374
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | |||||| || ||||| || | |||||
Sbjct 1398373 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 1398315
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 1398314 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 1398274
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| |||| || |||||||| ||||| ||||||||| || ||||| |||| ||
Sbjct 760231 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 760290
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| || | |||||||||||| | || | | ||||||||||
Sbjct 760291 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 760350
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | || || || ||||| |||| ||||| || ||
Sbjct 760351 ATCTTTGACTTGA-CGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTT 760409
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| |||| || || |||||||| |||||
Sbjct 760410 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 760439
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||| || ||||| |||| || |||||||| || || ||
Sbjct 760476 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 760535
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | | |||||||||| |||||| ||||| |||
Sbjct 760536 GATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 760594
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || ||| || || || || | |||||||| ||||| || || || || |
Sbjct 760595 TGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTGA 760654
Query 46581 C 46581
|
Sbjct 760655 C 760655
>seq1
Length=7294945
Score = 118 bits (130), Expect = 1e-21
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || || || || | || |||||||||||||| ||||| |
Sbjct 2968755 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 2968814
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 2968815 TCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 2968874
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 2968875 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 2968934
Query 46584 AGATTT--GCATTT 46595
| ||| ||||||
Sbjct 2968935 AACTTTTCGCATTT 2968948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238237493960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |