Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 284 1e-71 seq6 118 1e-21 seq1 104 2e-17 >seq7 Length=2824016 Score = 284 bits (314), Expect = 1e-71 Identities = 580/850 (68%), Gaps = 25/850 (3%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || ||||| || ||||| || || || || || || ||| ||| ||| | Sbjct 1203420 TTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 1203361 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | ||||| ||| | |||| | || ||||| Sbjct 1203360 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAG-AG--CGACG 1203304 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCC 132777 ||||| | ||||| || ||||| ||||| ||| ||| ||| || || | ||| Sbjct 1203303 AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCG---TTCATGCCC 1203247 Query 132778 AGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836 |||||| |||| || || || ||||| | || ||||||||| ||| || || || Sbjct 1203246 AGCAGA-GCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGT 1203188 Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896 || |||||| | | | || ||| | || | | || || | | || ||| Sbjct 1203187 GATGATTTCACGGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGGCA 1203128 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 |||||||||| |||| |||||||| | || ||||| |||||| ||| |||| ||| Sbjct 1203127 AGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCC 1203068 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||| || | || |||||||| || |||| ||| || || ||||||| Sbjct 1203067 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 1203008 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCG 133074 ||||||||||| || || || || ||||||| | || | | || ||| |||| Sbjct 1203007 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGG-- 1202950 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| | ||||| || ||||| | || ||| || || || || |||||||| Sbjct 1202949 ATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTG 1202890 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | | |||| | || | | | ||||||||||||||||| || || Sbjct 1202889 AAGAG--GTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGG 1202832 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || ||||| | ||||||||| ||| || || ||||| ||||| || |||||| | Sbjct 1202831 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGA 1202772 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 ||| || || ||||||||||||||| || |||||||| ||||||||| ||| | Sbjct 1202771 TCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAG 1202712 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCC 133369 | || || |||| | ||| |||||| | ||||| ||||||| ||| | || Sbjct 1202711 CAAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 1202652 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||||| || ||||||||||| || | ||| ||| ||||||| || || |||||||| | Sbjct 1202651 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCT 1202592 Query 133430 TTTTGTACAT 133439 |||||||||| Sbjct 1202591 TTTTGTACAT 1202582 >seq6 Length=3085841 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 1398276 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1398335 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 1398336 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1398394 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | || || || ||||| || || | |||||||| | |||||| Sbjct 1398395 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 1398454 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| ||||| Sbjct 1398455 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1398493 Score = 114 bits (126), Expect = 1e-20 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| | || || ||| | | Sbjct 760439 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 760380 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || ||| || | ||||| ||||| || ||| | ||||| Sbjct 760379 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 760321 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 760320 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 760261 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| || ||||| ||||| || || || | || |||| Sbjct 760260 CATCCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCC 760211 Score = 111 bits (122), Expect = 2e-19 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || ||||| ||||| |||||||| |||| |||||| | |||| | | Sbjct 760660 TAGTCGTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCA 760601 Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | |||| | || || |||| ||||| ||||| || || ||||||| ||||| Sbjct 760600 TTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGT 760542 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 ||||| | || || || ||||| || |||| |||||||| | ||| ||||||||||| Sbjct 760541 CTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAG 760482 Query 38430 AAGGA 38434 ||||| Sbjct 760481 AAGGA 760477 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || || || || | || || || |||||||||| Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 760733 >seq1 Length=7294945 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || |||||| || | ||||| || || || |||||||| ||||||||| | || ||||| Sbjct 2968951 AACAAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA 2968892 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | || |||||| | | | | || || |||| ||||| |||||||| ||| | Sbjct 2968891 GTCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCC 2968832 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| | || | ||| ||||| ||||| || || | || ||||| || Sbjct 2968831 GGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGA 2968772 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTG 38444 |||||||||||| |||| ||| ||||| Sbjct 2968771 CTACAACATCCAGAAGG-TGCGTCGCTG 2968745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172656200320