Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-16 seq3 96.9 3e-14 >seq1 Length=7294945 Score = 102 bits (112), Expect = 6e-16 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 366983 AAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTA 367042 |||| ||| |||||||||| || || ||||| |||||||| || ||||||| || || | Sbjct 2339919 AAATTAAAGTTGTAGTAGCAACCATTGCATTCGGTATGGGAATCGATAAACCAGACGTCA 2339978 Query 367043 GAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTA 367102 || ||||||| || |||| ||| |||| | ||||| ||||||||||||| ||| Sbjct 2339979 GATTTGTTATGCACCATGGCATTCCGAAGAGCTTAGAAGGCTATTATCAAGAAACTGGCC 2340038 Query 367103 GAGCAGGTCGTGATGGAGAAA 367123 | || || || ||||| |||| Sbjct 2340039 GTGCGGGCCGAGATGG-GAAA 2340058 >seq3 Length=5619901 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| | ||||| |||||||||||| ||||| |||| ||| | || || Sbjct 2015964 GAATTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTTATTGATACCGCTGTCAAGACA 2016023 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAA 671772 || || |||||||| ||||| ||| || || ||| ||||||||| |||| Sbjct 2016024 GCCGAGACTGGTTACATTCAGAGACGTCTCGTCAAAGCTCTCGAAGATCTCAA 2016076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821258664238