Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 223 4e-53 seq1 84.2 3e-11 >seq3 Length=5619901 Score = 223 bits (246), Expect = 4e-53 Identities = 464/689 (67%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 3989027 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 3989086 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || |||||||| || || || || ||||| ||| Sbjct 3989087 TCCTCAATGGTCAGGAGAGAGACATCGAAAGTACCACCGCCAAGATCGAAGATGAGGACG 3989146 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 3989147 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCG 3989206 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 3989207 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 3989266 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| |||| | | || || Sbjct 3989267 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTGACGGTGGTGCCCAGG 3989326 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || | ||| || || ||||| || | | Sbjct 3989327 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGAGTG 3989386 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || | || || || || || || || || || | | ||| || | ||| | | Sbjct 3989387 AAGTTCTTGGTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 3989442 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || || ||| | | | | ||||| || | || |||| | || | ||||| | Sbjct 3989443 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGGATCGGCGAACTTGCG 3989502 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 3989503 ACCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 3989562 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| || | || || || || ||| |||| |||||||| Sbjct 3989563 GGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 3989619 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| ||||| || || ||||| | | ||| |||||||| Sbjct 3989620 TCGGTTACCCTGGTCGTTGGCAATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 3989679 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 3989680 AGAGTACGTAGTACCCAGGTCGATACCGA 3989708 >seq1 Length=7294945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 361/569 (63%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||||| ||| || ||||| | || || ||||| || | Sbjct 1233201 TCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGG 1233142 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | |||||||||||| Sbjct 1233141 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAA 1233082 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| || | | | | ||| || | || | ||| ||| Sbjct 1233081 GGCTCGAGGTAGATGGCAA-AGGCAC--CAGGGCGCTTGTTGCCACCCTGGTCGACGTAT 1233025 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| | ||||| | ||| || || ||||| | ||| || || || || Sbjct 1233024 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTG 1232965 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || ||| | || | ||||| | | ||| |||| | || ||||| |||||| Sbjct 1232964 CCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCC 1232905 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || ||||| |||| || ||||| ||||| || || || || ||| Sbjct 1232904 ATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1232845 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972 || | | | |||||| || || |||| || | | || |||||||| ||||| || Sbjct 1232844 TTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGG 1232785 Query 105973 GTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGA 106032 || || | ||||| | || || | || | | |||||| || ||||| | Sbjct 1232784 GTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGC 1232725 Query 106033 TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCA 106092 ||||| | || ||| || |||| ||| || |||||| | | || ||| ||| Sbjct 1232724 TCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCA 1232665 Query 106093 ATAATTTCACCGTCAATTTTCTGGAGATA 106121 | ||| | || |||| ||| ||||||| Sbjct 1232664 ACAATCTTGCCATCAAGCTTCAGGAGATA 1232636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132617399320