Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3 223 4e-53
seq1 84.2 3e-11
>seq3
Length=5619901
Score = 223 bits (246), Expect = 4e-53
Identities = 464/689 (67%), Gaps = 8/689 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 3989027 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 3989086
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || |||||||| || || || || ||||| |||
Sbjct 3989087 TCCTCAATGGTCAGGAGAGAGACATCGAAAGTACCACCGCCAAGATCGAAGATGAGGACG 3989146
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| || || || || || || || ||
Sbjct 3989147 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCG 3989206
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| || || ||||| | || || || || || || ||
Sbjct 3989207 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 3989266
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| |||| | | || ||
Sbjct 3989267 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTGACGGTGGTGCCCAGG 3989326
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || ||| | || ||| ||||| || | ||| || || ||||| || | |
Sbjct 3989327 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGAGTG 3989386
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875
|| | || || || || || || || || || | | ||| || | ||| | |
Sbjct 3989387 AAGTTCTTGGTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 3989442
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
|| || ||| | | | | ||||| || | || |||| | || | ||||| |
Sbjct 3989443 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGGATCGGCGAACTTGCG 3989502
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|| || | ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 3989503 ACCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 3989562
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
|| || || || || ||||| || | || || || || ||| |||| ||||||||
Sbjct 3989563 GGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 3989619
Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
||| || || |||||||| ||||| || || ||||| | | ||| ||||||||
Sbjct 3989620 TCGGTTACCCTGGTCGTTGGCAATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 3989679
Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144
|| ||||| || || | || |||||||
Sbjct 3989680 AGAGTACGTAGTACCCAGGTCGATACCGA 3989708
>seq1
Length=7294945
Score = 84.2 bits (92), Expect = 3e-11
Identities = 361/569 (63%), Gaps = 9/569 (2%)
Strand=Plus/Minus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||||| ||| || ||||| | || || ||||| || |
Sbjct 1233201 TCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGG 1233142
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
||||||| | || || ||| || | || || || || | | ||||||||||||
Sbjct 1233141 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAA 1233082
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | |||| |||| || | | | | ||| || | || | ||| |||
Sbjct 1233081 GGCTCGAGGTAGATGGCAA-AGGCAC--CAGGGCGCTTGTTGCCACCCTGGTCGACGTAT 1233025
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
|| || || ||| | ||||| | ||| || || ||||| | ||| || || || ||
Sbjct 1233024 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTG 1232965
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
|| ||| | || | ||||| | | ||| |||| | || ||||| ||||||
Sbjct 1232964 CCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCC 1232905
Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912
||| || ||||| |||| || ||||| ||||| || || || || |||
Sbjct 1232904 ATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1232845
Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972
|| | | | |||||| || || |||| || | | || |||||||| ||||| ||
Sbjct 1232844 TTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGG 1232785
Query 105973 GTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGA 106032
|| || | ||||| | || || | || | | |||||| || ||||| |
Sbjct 1232784 GTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGC 1232725
Query 106033 TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCA 106092
||||| | || ||| || |||| ||| || |||||| | | || ||| |||
Sbjct 1232724 TCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCA 1232665
Query 106093 ATAATTTCACCGTCAATTTTCTGGAGATA 106121
| ||| | || |||| ||| |||||||
Sbjct 1232664 ACAATCTTGCCATCAAGCTTCAGGAGATA 1232636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132617399320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |