Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 286 4e-72 seq7 143 3e-29 seq4 120 4e-22 >seq1 Length=7294945 Score = 286 bits (316), Expect = 4e-72 Identities = 1124/1743 (64%), Gaps = 41/1743 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || || | || | || || | ||||| ||| Sbjct 1232672 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1232731 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||||||| || |||||| | | || | ||| || | || ||||||||| Sbjct 1232732 CTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCCTCTCCCACCCTCTTC 1232791 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| ||| | | || ||||| || ||||| | | | ||||| || Sbjct 1232792 AACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGAC 1232851 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||| | ||||||| || || ||| ||||||| Sbjct 1232852 AGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTGGT 1232911 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| | || | || | ||| ||| || || || Sbjct 1232912 GGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCAAC 1232971 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||| || || |||||||| || || ||| ||| || | || || Sbjct 1232972 GGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTC 1233031 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | ||| ||| || | | || |||| || ||||| |||||||| Sbjct 1233032 GACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCC 1233091 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| || | ||||||||||| | || ||||| || | || |||| || ||| Sbjct 1233092 GATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGT 1233151 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG--TG 112146 || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| || Sbjct 1233152 GACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAACTTG 1233211 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | | ||| || | | || || || || || || || || | || ||| ||| || Sbjct 1233212 G--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGGC-GA 1233267 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 || || || || || || ||||||||| ||| | | | | | | || ||| | Sbjct 1233268 AGAATTCGAGGCTCTGTATGAGAAGTACGAG-AAGGAGGGCAAGGGTC-GCAAGACTATC 1233325 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | |||| | || | ||||| | | || || || | || || |||||||||| || | Sbjct 1233326 CGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCCCTT 1233384 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||||||||| || ||||| |||| ||||| || || ||||| |||| ||| Sbjct 1233385 TATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCG 1233444 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || ||| | || | | | | || ||| ||||| || Sbjct 1233445 AAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGTCTG 1233504 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGAT 112499 ||| | || || | |||||||| | ||| || | | | || ||| | | ||| Sbjct 1233505 CAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTATGAC 1233562 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | | || || ||||| ||||| || || ||||| ||| | | || ||| Sbjct 1233563 TTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATCGAT 1233622 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || | ||||||||| || ||||| || ||| | | ||||| || |||||| Sbjct 1233623 GTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATTGGT 1233682 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGA 112678 | ||||| || ||||| || || | ||| | || || || | | || || || Sbjct 1233683 GTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATCACC 1233741 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 |||||| || | || || || |||||||| || || ||||| || || ||||| Sbjct 1233742 CGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGAGGC 1233801 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 | |||| | || || | || ||||| ||||| | || |||| || || || || Sbjct 1233802 ATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGCCTC 1233861 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA 112858 |||| | || || ||||| ||||||| | || ||| | | || ||||| Sbjct 1233862 TGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTGGGA 1233921 Query 112859 CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAAT 112918 | | |||||||| | || |||||| | ||| |||| |||||| | | | || || || Sbjct 1233922 CTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCCCAT 1233981 Query 112919 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 112978 ||| || ||| ||| | || ||| |||| || ||||||||||| || |||||||| | Sbjct 1233982 GCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACACCTC 1234041 Query 112979 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA---GCATCT 113035 |||||||| | | || | ||| || || ||||| | |||||||| || ||| Sbjct 1234042 CAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCT 1234101 Query 113036 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT----GG 113091 | |||| || || | ||| ||||||||| | | ||||||| | | ||| | Sbjct 1234102 CAAGGATCTTGTC---GATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCATCATTGC 1234158 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 ||| | ||| ||| || || || ||| | ||||| | || || ||| ||| Sbjct 1234159 TGAGAACGG----TTCTATCCAGAACATTCCCAACATTCCCGCCGACATCAAGGCCCTGT 1234214 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || |||||||| ||| | | || | | ||| | || || |||||| Sbjct 1234215 ACAAGACTGTTTGGGAGATCTCTCAGCGCCACATCGTCCAGATGTCAGCCGACCGTGGTG 1234274 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 |||||||||| |||| ||| |||| | |||| | ||| || ||| ||| Sbjct 1234275 CTTTCATTGATC--AGTCCCAGTCCTTGAACATCCACATGAAGGATCCCACAATGGGCAA 1234332 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329 | | | |||||| | | |||||| |||||||| || || ||||| ||||| Sbjct 1234333 GATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACTGGCATGTACTACCT 1234392 Query 113330 CCG 113332 || Sbjct 1234393 GCG 1234395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 200/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 || || | |||||| | ||| | ||||| || | |||||||||||||| |||| || Sbjct 4043670 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 4043611 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 || | ||||| |||||||| | | || |||| || ||||||||||| ||| || Sbjct 4043610 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 4043551 Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 176211 | | ||| | | |||| || | | |||| | |||||||||| | ||| | Sbjct 4043550 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 4043495 Query 176212 GTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 176271 | |||||| ||||||| ||||| ||||| |||||| || ||||| ||| | Sbjct 4043494 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 4043435 Query 176272 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 176327 ||| || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 4043434 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 4043379 >seq7 Length=2824016 Score = 143 bits (158), Expect = 3e-29 Identities = 352/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 1202609 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 1202668 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| ||||| |||| |||||||||| ||||| || ||| Sbjct 1202669 GATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATT 1202728 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 1202729 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 1202787 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | || || | |||| ||| | | | || ||||| ||| |||| Sbjct 1202788 CTTCTACG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 1202846 Query 102052 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 102109 | |||| || | ||||| | | | || || | ||||| | ||||| | || Sbjct 1202847 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 1202904 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || || | ||||| || || ||||| || |||||| | | |||| | | | Sbjct 1202905 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 1202964 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 1202965 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 1203023 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 1203024 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 1203083 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 1203084 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 1203126 >seq4 Length=4000284 Score = 120 bits (132), Expect = 4e-22 Identities = 281/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || || | ||||| | ||| | || |||| | ||||| || |||| Sbjct 1906489 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 1906548 Query 15948 ATGACAACAATACCTGTT-TCGT-TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | |||||| | |||||| ||| | | || || ||||| ||||| | || |||||||| Sbjct 1906549 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 1906606 Query 16006 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 16061 || || ||||||||||| ||| | || ||| || || || || || | Sbjct 1906607 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 1906661 Query 16062 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 ||||| ||| || || |||||||||| |||||| || || | || | | Sbjct 1906662 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 1906721 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||| || || ||||| || | ||||| |||||||||||||||||||| | | Sbjct 1906722 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 1906781 Query 16175 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 || || | | ||| ||||| ||| || || ||| | || ||||||||||| Sbjct 1906782 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 1906840 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||| || || || || ||| | ||| | ||| ||||| ||||||||||| || Sbjct 1906841 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 1906895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742221536560