Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1 286 4e-72
seq7 143 3e-29
seq4 120 4e-22
>seq1
Length=7294945
Score = 286 bits (316), Expect = 4e-72
Identities = 1124/1743 (64%), Gaps = 41/1743 (2%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|||||| ||||| | ||||| || || | || | || || | ||||| |||
Sbjct 1232672 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1232731
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||||||| || |||||| | | || | ||| || | || |||||||||
Sbjct 1232732 CTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCCTCTCCCACCCTCTTC 1232791
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||||||||| ||| | | || ||||| || ||||| | | | ||||| ||
Sbjct 1232792 AACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGAC 1232851
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| | || || |||| |||||| | ||||||| || || ||| |||||||
Sbjct 1232852 AGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTGGT 1232911
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|||||||| || || |||| | || | || | ||| ||| || || ||
Sbjct 1232912 GGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCAAC 1232971
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||||| || || |||||||| || || ||| ||| || | || ||
Sbjct 1232972 GGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTC 1233031
Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028
|||| | ||| ||| || | | || |||| || ||||| ||||||||
Sbjct 1233032 GACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCC 1233091
Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088
||| || | ||||||||||| | || ||||| || | || |||| || |||
Sbjct 1233092 GATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGT 1233151
Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG--TG 112146
|| || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| ||
Sbjct 1233152 GACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAACTTG 1233211
Query 112147 GCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204
| | ||| || | | || || || || || || || || | || ||| ||| ||
Sbjct 1233212 G--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGGC-GA 1233267
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262
|| || || || || || ||||||||| ||| | | | | | | || ||| |
Sbjct 1233268 AGAATTCGAGGCTCTGTATGAGAAGTACGAG-AAGGAGGGCAAGGGTC-GCAAGACTATC 1233325
Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321
| |||| | || | ||||| | | || || || | || || |||||||||| || |
Sbjct 1233326 CGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCCCTT 1233384
Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381
|||||||||||| || ||||| |||| ||||| || || ||||| |||| |||
Sbjct 1233385 TATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCG 1233444
Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441
|| ||||||||||| || || ||| | || | | | | || ||| ||||| ||
Sbjct 1233445 AAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGTCTG 1233504
Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGAT 112499
||| | || || | |||||||| | ||| || | | | || ||| | | |||
Sbjct 1233505 CAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTATGAC 1233562
Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559
| | | || || ||||| ||||| || || ||||| ||| | | || |||
Sbjct 1233563 TTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATCGAT 1233622
Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619
|| | ||||||||| || ||||| || ||| | | ||||| || ||||||
Sbjct 1233623 GTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATTGGT 1233682
Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGA 112678
| ||||| || ||||| || || | ||| | || || || | | || || ||
Sbjct 1233683 GTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATCACC 1233741
Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738
|||||| || | || || || |||||||| || || ||||| || || |||||
Sbjct 1233742 CGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGAGGC 1233801
Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798
| |||| | || || | || ||||| ||||| | || |||| || || || ||
Sbjct 1233802 ATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGCCTC 1233861
Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA 112858
|||| | || || ||||| ||||||| | || ||| | | || |||||
Sbjct 1233862 TGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTGGGA 1233921
Query 112859 CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAAT 112918
| | |||||||| | || |||||| | ||| |||| |||||| | | | || || ||
Sbjct 1233922 CTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCCCAT 1233981
Query 112919 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 112978
||| || ||| ||| | || ||| |||| || ||||||||||| || |||||||| |
Sbjct 1233982 GCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACACCTC 1234041
Query 112979 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA---GCATCT 113035
|||||||| | | || | ||| || || ||||| | |||||||| || |||
Sbjct 1234042 CAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCT 1234101
Query 113036 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT----GG 113091
| |||| || || | ||| ||||||||| | | ||||||| | | ||| |
Sbjct 1234102 CAAGGATCTTGTC---GATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCATCATTGC 1234158
Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151
||| | ||| ||| || || || ||| | ||||| | || || ||| |||
Sbjct 1234159 TGAGAACGG----TTCTATCCAGAACATTCCCAACATTCCCGCCGACATCAAGGCCCTGT 1234214
Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211
|| || |||||||| ||| | | || | | ||| | || || ||||||
Sbjct 1234215 ACAAGACTGTTTGGGAGATCTCTCAGCGCCACATCGTCCAGATGTCAGCCGACCGTGGTG 1234274
Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269
|||||||||| |||| ||| |||| | |||| | ||| || ||| |||
Sbjct 1234275 CTTTCATTGATC--AGTCCCAGTCCTTGAACATCCACATGAAGGATCCCACAATGGGCAA 1234332
Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329
| | | |||||| | | |||||| |||||||| || || ||||| |||||
Sbjct 1234333 GATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACTGGCATGTACTACCT 1234392
Query 113330 CCG 113332
||
Sbjct 1234393 GCG 1234395
Score = 95.1 bits (104), Expect = 2e-14
Identities = 200/296 (68%), Gaps = 8/296 (3%)
Strand=Plus/Minus
Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095
|| || | |||||| | ||| | ||||| || | |||||||||||||| |||| ||
Sbjct 4043670 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 4043611
Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155
|| | ||||| |||||||| | | || |||| || ||||||||||| ||| ||
Sbjct 4043610 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 4043551
Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 176211
| | ||| | | |||| || | | |||| | |||||||||| | ||| |
Sbjct 4043550 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 4043495
Query 176212 GTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 176271
| |||||| ||||||| ||||| ||||| |||||| || ||||| ||| |
Sbjct 4043494 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 4043435
Query 176272 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 176327
||| || | | ||||||| |||||| | ||| ||||||| |||||||
Sbjct 4043434 GATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 4043379
>seq7
Length=2824016
Score = 143 bits (158), Expect = 3e-29
Identities = 352/523 (67%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873
||||| || |||||| | ||||| || |||||| || |||| ||||| | | | ||
Sbjct 1202609 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 1202668
Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933
|| | || ||| | ||||| ||||| |||| |||||||||| ||||| || |||
Sbjct 1202669 GATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATT 1202728
Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992
|| ||||| | | || | ||||| || |||| | || || |||
Sbjct 1202729 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 1202787
Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051
||||| | || || | |||| ||| | | | || ||||| ||| ||||
Sbjct 1202788 CTTCTACG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 1202846
Query 102052 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 102109
| |||| || | ||||| | | | || || | ||||| | ||||| | ||
Sbjct 1202847 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 1202904
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168
|||| || || | ||||| || || ||||| || |||||| | | |||| | | |
Sbjct 1202905 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 1202964
Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228
|||||||||| |||| || | || ||||| || ||||||||||||||| ||
Sbjct 1202965 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 1203023
Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288
|||| | | || | |||||||||||| ||||||||||||| || || ||||||||
Sbjct 1203024 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 1203083
Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 1203084 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 1203126
>seq4
Length=4000284
Score = 120 bits (132), Expect = 4e-22
Identities = 281/415 (68%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
|||||||| || || || | ||||| | ||| | || |||| | ||||| || ||||
Sbjct 1906489 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 1906548
Query 15948 ATGACAACAATACCTGTT-TCGT-TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005
| |||||| | |||||| ||| | | || || ||||| ||||| | || ||||||||
Sbjct 1906549 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 1906606
Query 16006 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 16061
|| || ||||||||||| ||| | || ||| || || || || || |
Sbjct 1906607 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 1906661
Query 16062 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114
||||| ||| || || |||||||||| |||||| || || | || | |
Sbjct 1906662 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 1906721
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
|||| || || ||||| || | ||||| |||||||||||||||||||| | |
Sbjct 1906722 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 1906781
Query 16175 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
|| || | | ||| ||||| ||| || || ||| | || |||||||||||
Sbjct 1906782 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 1906840
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
|||| || || || || ||| | ||| | ||| ||||| ||||||||||| ||
Sbjct 1906841 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 1906895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742221536560
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