Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 255 7e-63 seq7 104 3e-17 >seq1 Length=7294945 Score = 255 bits (282), Expect = 7e-63 Identities = 978/1502 (65%), Gaps = 43/1502 (3%) Strand=Plus/Minus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | ||||||| | | |||||| || ||| | | ||||| |||| || Sbjct 1234152 ATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAG 1234093 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || ||| | || | | |||||||| | |||||| Sbjct 1234092 GGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAG 1234033 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || ||||||||||| || |||| ||| || | ||| ||| || ||||| || || Sbjct 1234032 GGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCG 1233973 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT-- 106070 | | | |||||| |||| ||| | ||||| || | |||||||| ||||| | Sbjct 1233972 ACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCC 1233913 Query 106071 CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 | || | || | || || | | ||||||| ||||| || || | |||| || | || Sbjct 1233912 CACAGGTCAG-TGGGCTTGA-CATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGG 1233855 Query 106131 GAGAACCCTCAAATGTCTCAT-AGGAACCTTGGGCTTCAGCCAA--TTCACAGCTCGCCT 106187 | || |||| |||| ||||| |||| ||| | ||| | ||| | || || | |||| Sbjct 1233854 GTGATCCCTTGAATGACTCATAAGGACCCTCGATCTT--GGCAATCTCCATAGAT-GCCT 1233798 Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247 | |||| ||||| || ||||| |||||||| | |||| ||| ||||| || Sbjct 1233797 CGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTG 1233738 Query 106248 AATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 | || || | | || ||| | | || | || || ||||| |||||||| | |||| Sbjct 1233737 ATTCGAAAG-GAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCA 1233679 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 106366 || |||| ||| || | ||| || || || || |||||| || | || || Sbjct 1233678 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCG 1233619 Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 106426 |||| ||||| || || | ||| | ||| || | || ||||| || | | | ||| Sbjct 1233618 ATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCA 1233559 Query 106427 AAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 | || || | || | | | |||| | || || || | || ||||| ||||| Sbjct 1233558 TA---GC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCA 1233503 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 ||||| ||| || | | |||||| | || || || || | |||||| || Sbjct 1233502 GACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCG 1233443 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 || || |||| ||||| ||||| ||||| |||||| ||||||||||| ||||| | Sbjct 1233442 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1233383 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | || ||||| ||||| | || || || | | ||||| | || | ||| | | Sbjct 1233382 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTG-AGCTCGGA 1233324 Query 106662 CAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 | | | | ||| | |||||| ||||||||| || || || || || || || Sbjct 1233323 TAGTCTTG-CGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTC- 1233266 Query 106721 CCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA- 106777 ||| || ||| | || || || || || || || || | | || ||| | ||| Sbjct 1233265 GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATCAAAGTCCA--GTCCAA 1233209 Query 106778 -CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC- 106835 || |||||| ||||||||||| || || || ||||| || | || || || | Sbjct 1233208 GTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACG 1233149 Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895 ||| || ||||||| | || ||||| || | ||||||||||| | || ||| | Sbjct 1233148 GGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGG 1233090 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951 ||||||| ||||| || |||| || | | || | | | | ||| | || | Sbjct 1233089 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTG-CCACCCTGGTCG 1233031 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || || | || ||| ||| || || |||||||| || || ||||| | || ||| Sbjct 1233030 ACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCG 1232971 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || ||| ||| | || | | | |||| || || || ||||| Sbjct 1232970 TTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCA 1232911 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 |||||| ||| || || ||||| | | ||||| | |||||||| | || | Sbjct 1232910 CCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTG 1232851 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || ||||| || | | |||||||| ||||| ||| | | ||| |||||||| ||| Sbjct 1232850 TCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTG 1232791 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCA 107249 |||||||| || | || || | || | | || |||||| || ||||||||| | Sbjct 1232790 AAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCT--GGACATGAGGTGGTATGTCTCAA 1232733 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 |||| ||||||| || || | ||| | ||||||||||||| ||||| || | Sbjct 1232732 GGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTG 1232673 Query 107310 GT 107311 || Sbjct 1232672 GT 1232671 >seq7 Length=2824016 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 1203126 GCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 1203067 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 1203066 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 1203007 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||| || ||||| |||| |||||||| || ||||| ||| | |||| | | Sbjct 1203006 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGAT 1202948 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || || ||||| | |||||||| || || || | || | ||||| | || Sbjct 1202947 CCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAA 1202888 Query 117513 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 | | | | | | | | ||||| | ||| |||| || | || || || | Sbjct 1202887 GAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 1202829 Query 117572 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 1202828 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 1202770 Query 117631 TGCACTTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 || || || |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 1202769 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 1202711 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 117746 |||||| |||| ||||| ||||| | ||| || | || |||| || | ||||| Sbjct 1202710 AAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 1202651 Query 117747 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 1202650 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 1202609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980630380520