Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 147 5e-30
seq1 100 6e-16
>seq6
Length=3085841
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| ||| || || | ||||| |||
Sbjct 1398487 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 1398428
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| | ||| || ||||| || |||||||| || ||||| ||
Sbjct 1398427 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 1398368
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| |||||||| | ||||||
Sbjct 1398367 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1398308
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 1398307 CCCGTGAGGGTCTTGACGAAAATCTGCAT 1398279
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| ||||||| ||||| |||
Sbjct 760739 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 760798
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 760799 AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 760858
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || || ||||| ||| ||||| || ||||| | |||||
Sbjct 760859 ATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 760918
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 760919 CCGGTGAGGGTCTTGACGAAGATTTGCAT 760947
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||| ||| || || || ||||| ||| || || | || ||||| |||||
Sbjct 760236 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTG 760295
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| || || || ||||| || || || || || ||||| ||||| ||
Sbjct 760296 CTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTT 760355
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||||||||| || ||||| || || |||||||| || || | ||||| || ||
Sbjct 760356 TGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGT 760415
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || | |||||
Sbjct 760416 CAAAGTCTTGACAAAGATCTGCAT 760439
Score = 120 bits (132), Expect = 7e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || || || ||||||||| || || | || || ||
Sbjct 760459 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCA 760518
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| || || || ||||| ||||| || || || ||||| ||
Sbjct 760519 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 760578
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| |||||||| || || || || || || || | |||||
Sbjct 760579 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTG 760638
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | ||| || ||||
Sbjct 760639 CCGGTGAGAGTCTTGACGA 760657
>seq1
Length=7294945
Score = 100 bits (110), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | || |||| ||||| ||||||||||| || ||||||||
Sbjct 2968757 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 2968816
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||| || || || || || || || || ||||| || || || |||||| || ||
Sbjct 2968817 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 2968876
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
|| ||||| || || || |||||||| | ||||| || |||| || || |||||
Sbjct 2968877 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA- 2968935
Query 195133 ACTT---GCATTT 195142
|||| ||||||
Sbjct 2968936 ACTTTTCGCATTT 2968948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481273049641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |