Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 82.4 9e-11
>seq1
Length=7294945
Score = 82.4 bits (90), Expect = 9e-11
Identities = 213/325 (66%), Gaps = 0/325 (0%)
Strand=Plus/Minus
Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184
||| ||||| || ||||| | | | | ||||| ||||| || || |||||||| |
Sbjct 1233277 CTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGT 1233218
Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244
||| ||| | || | || | |||| || | ||| || ||||| ||||| | ||
Sbjct 1233217 CCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 1233158
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| || | | | | ||||| ||||| ||| | || ||||| || || |
Sbjct 1233157 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 1233098
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
| ||| || ||||| || || | || || || | |||| || || || || || ||
Sbjct 1233097 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 1233038
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
|| || | ||||||||||| ||||| | |||| | ||| |||| ||||| || ||
Sbjct 1233037 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1232978
Query 48425 TATACCATTGGTTCCCGAAATATAA 48449
|||| ||||| || | ||| |||
Sbjct 1232977 GGTACCGTTGGTGCCGGCAATGTAA 1232953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108638393720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |