Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 9e-11 >seq1 Length=7294945 Score = 82.4 bits (90), Expect = 9e-11 Identities = 213/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || ||||| | | | | ||||| ||||| || || |||||||| | Sbjct 1233277 CTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGT 1233218 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| ||| | || | || | |||| || | ||| || ||||| ||||| | || Sbjct 1233217 CCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 1233158 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | | | | ||||| ||||| ||| | || ||||| || || | Sbjct 1233157 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 1233098 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | || || || | |||| || || || || || || Sbjct 1233097 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 1233038 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | |||| | ||| |||| ||||| || || Sbjct 1233037 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1232978 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 |||| ||||| || | ||| ||| Sbjct 1232977 GGTACCGTTGGTGCCGGCAATGTAA 1232953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108638393720