Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 5e-12 >seq3 Length=5619901 Score = 86.0 bits (94), Expect = 5e-12 Identities = 252/384 (66%), Gaps = 16/384 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||| || || || ||||||||| ||||| || |||||||| |||| | ||| | Sbjct 1519720 TGTGACAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTTGGGTTCCATGCGCTGAGGATCA 1519779 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 | | | ||| | ||| |||| | || || | | |||| |||||| | Sbjct 1519780 TTCTGCGGTCGTAGGGGCTGTTTCGCAGCTTGTGGATGATCTCGGC------CAGCTGGT 1519833 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | |||||||| || || ||||| || || |||| || Sbjct 1519834 CGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACATAGTCTGCGCCAAAGTGCCGCC 1519893 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TG 30240 ||||||| ||||| || || |||||||| || | || | ||| || |||| | || Sbjct 1519894 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGGGTGA-GCCCGACGCTG 1519952 Query 30241 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 30300 || | || || | ||| |||||| ||||||||||||| || ||| ||| ||| | Sbjct 1519953 TCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCCACGTCGCTGAGGGCG 1520012 Query 30301 TTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 ||| ||| ||||| || |||||| || ||||| | | |||||| || Sbjct 1520013 GCGGACGAGGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAA 1520071 Query 30360 GACCCTCTTGGTCGTGAGGAGGGG 30383 ||| | |||||| ||||| ||||| Sbjct 1520072 GACTCGCTTGGTGGTGAGCAGGGG 1520095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617485459379