Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 86.0 5e-12
>seq3
Length=5619901
Score = 86.0 bits (94), Expect = 5e-12
Identities = 252/384 (66%), Gaps = 16/384 (4%)
Strand=Plus/Plus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
|||| || || || ||||||||| ||||| || |||||||| |||| | ||| |
Sbjct 1519720 TGTGACAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTTGGGTTCCATGCGCTGAGGATCA 1519779
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
| | | ||| | ||| |||| | || || | | |||| |||||| |
Sbjct 1519780 TTCTGCGGTCGTAGGGGCTGTTTCGCAGCTTGTGGATGATCTCGGC------CAGCTGGT 1519833
Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181
| || ||| | || | |||||||| || || ||||| || || |||| ||
Sbjct 1519834 CGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACATAGTCTGCGCCAAAGTGCCGCC 1519893
Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TG 30240
||||||| ||||| || || |||||||| || | || | ||| || |||| | ||
Sbjct 1519894 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGGGTGA-GCCCGACGCTG 1519952
Query 30241 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 30300
|| | || || | ||| |||||| ||||||||||||| || ||| ||| ||| |
Sbjct 1519953 TCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCCACGTCGCTGAGGGCG 1520012
Query 30301 TTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359
||| ||| ||||| || |||||| || ||||| | | |||||| ||
Sbjct 1520013 GCGGACGAGGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAA 1520071
Query 30360 GACCCTCTTGGTCGTGAGGAGGGG 30383
||| | |||||| ||||| |||||
Sbjct 1520072 GACTCGCTTGGTGGTGAGCAGGGG 1520095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617485459379
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |