Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 102 6e-17
>seq6
Length=3085841
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || |||||||| || || || ||||| || || | ||| |||| |||
Sbjct 760231 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 760290
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||||||||| || || || || ||||| || || | ||| | ||||||||||| |
Sbjct 760291 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 760350
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| || || | | | || || | |||||| |||| || || || ||
Sbjct 760351 ATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTG 760410
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| || ||||| ||||||||
Sbjct 760411 CCGGTCAAAGTCTTGACAAAGATCTGCAT 760439
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||| || || ||| ||| || || || ||||| || || | ||
Sbjct 1398496 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 1398437
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||||||| ||||| |||| |||||| || |||| ||||| |||||||
Sbjct 1398436 CCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 1398377
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||||||||| | ||
Sbjct 1398376 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 1398317
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||||| || ||||| | || || || |||||||||||| ||
Sbjct 1398316 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 1398275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937493218429
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |