Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 313 5e-80 seq7 201 2e-46 >seq1 Length=7294945 Score = 313 bits (346), Expect = 5e-80 Identities = 1145/1758 (65%), Gaps = 86/1758 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||| ||||||| ||| || || ||||||||||| ||||| Sbjct 1234431 ACTGTGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTG 1234372 Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| ||| | |||||| |||| | | ||| | ||| Sbjct 1234371 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATT 1234324 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||||| || || | ||||| |||||| ||| || ||||| | | Sbjct 1234323 GTGGG-ATCCTT------CATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACC 1234271 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || | ||| | | ||| | | ||| |||| |||||| || |||||| | | Sbjct 1234270 ACGGTCGGCTGACATCTGGACGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAG 1234211 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| ||| | || | | ||| |||||||| | ||| || | | ||| | Sbjct 1234210 GGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGAT 1234151 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | ||| | ||| ||||||||| | | || ||||| || Sbjct 1234150 GCGGTTCTT---CATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCA 1234094 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| || ||||| Sbjct 1234093 GGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTA 1234034 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || || ||||| ||||| ||||| | ||||||||| ||||||||||| || Sbjct 1234033 GGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGC 1233974 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || | |||||| | | |||||||| || | | ||| |||| Sbjct 1233973 GACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCG------AGTC 1233920 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || ||| |||||| | ||| || | ||||| ||||||||| | ||||||| Sbjct 1233919 CCA-CTCCCA--CAGGTCAGTGGGCTTGACATCCCACAAGTCAAACTGGAGAATGCCTT- 1233864 Query 213146 GCTCACGGGGCTG--CCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | | | || || |||| | | || || || || | |||||| | ||| Sbjct 1233863 -CAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATA 1233805 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || |||| |||||||||| ||||||||| ||||| || | | |||| | || || Sbjct 1233804 GATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCT 1233745 Query 213264 TCTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || || || ||| || | || ||| |||| | ||||| || ||||| || || Sbjct 1233744 TCGGGTGATTCGAAAGGAAGACGCAGAGCGA-GGAAAGCGTCAGCAAGACCCTGAACACC 1233686 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 | || ||||||| ||| | |||| ||| |||| ||||| | |||||| ||| Sbjct 1233685 AACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGAACGGGGTAGTAGT 1233627 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 | |||||||| ||||||||| ||| |||| ||||| |||| | || | || Sbjct 1233626 TCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCT 1233567 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495 | || | |||| || || | ||||| |||| || || | || Sbjct 1233566 ------TAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGG 1233513 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || ||||| | || | | | |||||| | |||||| ||||| |||| Sbjct 1233512 CCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGT 1233453 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTG 213614 || || ||||||||| |||||||||| ||||| ||| ||| | |||| ||||||| Sbjct 1233452 TGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTG 1233394 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || ||||| ||||| || ||||| ||||| | | || || | ||| || | | Sbjct 1233393 TAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTC 1233334 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 || || | | | ||| | | | | |||||||| || || || | Sbjct 1233333 -TGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTT--CTCGTACTTCTCATACAGAGCC 1233277 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGA 213789 | |||||| | ||| || | ||| || | || |||| || || || ||||| | Sbjct 1233276 TCGAATTCTTCGCCATAG---CAGTC-AG-CAAGGCCAGGGCATTCGTTGGGGCACATCA 1233222 Query 213790 GGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCG 213848 |||||||| || | |||| || | || ||||||||| || |||| ||| || ||| Sbjct 1233221 AAGTCCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAACAGATCAGGGATCCAGAGAGCG 1233163 Query 213849 GTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAG 213908 ||||||||| | || | ||| ||| || ||| ||||| || || || || Sbjct 1233162 AGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAC 1233103 Query 213909 TCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTG 213965 ||||||| || |||||||| ||||| | ||||||||||||||| || | || | ||| Sbjct 1233102 TCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTG 1233043 Query 213966 CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 || |||||||| || ||||| ||||||||| || || | ||| | | ||| Sbjct 1233042 CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCG 1232983 Query 214026 TTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATG 214082 ||||| |||||||| || || || || ||||| | || | | ||| | | | Sbjct 1232982 TTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGG---ACG 1232926 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 || || || ||||| || |||||| |||||||| || | | | ||| || | Sbjct 1232925 TTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAG 1232866 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 || || | |||||||| || | | || || || |||||| || |||| | || || Sbjct 1232865 ATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCTTG 1232807 Query 214203 -GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | |||| |||||| || ||||| ||||||| | | || ||| | || | ||| Sbjct 1232806 TGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAG 1232747 Query 214262 CCTGTAGGTCTCCAGGAC 214279 ||| ||||| ||||| Sbjct 1232746 GTGGTATGTCTCAAGGAC 1232729 >seq7 Length=2824016 Score = 201 bits (222), Expect = 2e-46 Identities = 564/850 (66%), Gaps = 28/850 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | ||||| |||||||| ||||| || ||| |||||||||||| Sbjct 1203417 TGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCC 1203358 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCAG 47958 |||||| |||||||||| | || || | | | || ||| | | ||||| Sbjct 1203357 ATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCT-TCTCGTTGCCAAGAGCGACGAGCAG 1203299 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| || || |||| ||||| | ||| |||||| ||||||||| | || | Sbjct 1203298 ACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAG- 1203240 Query 48019 CAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| || | || || | ||| || ||| ||||| || | || Sbjct 1203239 CACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTG-ACGGCATCAGTGATGAT- 1203182 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTG------GCATAGAGCATG 48130 || ||| | | ||| || | |||| ||| ||| | | ||||| | Sbjct 1203181 ---TTCACG-GATAATCTCC---TTGCTGGCGC-GGTTCTTCAGGTGAGAGTGGAGCAGG 1203130 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||||| || ||||| || ||||||| ||||||||||| || Sbjct 1203129 CAAGCAAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGG 1203070 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || |||| ||||||||||| || | || || | || ||||||| Sbjct 1203069 CCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAG 1203010 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || || || | || | || |||| || |||||| | Sbjct 1203009 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGG 1202950 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | |||||||| |||||||| |||||| || || ||||| ||||| | Sbjct 1202949 ATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTG 1202890 Query 48371 AAGAGCTTCTTGCACTCAC-CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||||| | |||| || | ||| ||| || ||||| || ||| | ||| | Sbjct 1202889 AAGAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGT 1202831 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | Sbjct 1202830 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 1202771 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||| | ||| | ||| ||||| ||||| || || || || ||||| Sbjct 1202770 CTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 1202711 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 |||||| || | || || | ||| | ||||| | | | || || |||| Sbjct 1202710 AAAGAAAGCCAAGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCC 1202652 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | ||||| | ||||||||||| || || | Sbjct 1202651 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCT 1202592 Query 48666 TTTTGTACAT 48675 |||||||||| Sbjct 1202591 TTTTGTACAT 1202582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532532184320