Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 253 4e-62
seq7 232 1e-55
>seq1
Length=7294945
Score = 253 bits (280), Expect = 4e-62
Identities = 841/1281 (66%), Gaps = 59/1281 (5%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||||||||||||||||||||||||||| |||||| | ||| | || ||||| ||
Sbjct 1233795 AGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAA-CTCGCGAGCTTCGGGTGA 1233737
Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
||| || | |||||| | | ||||| |||| || || ||||| || || | |||
Sbjct 1233736 TTCGAAAGGAAGACGCAG-AGCGAGGAAAG-CGTCAGCAAGACCCTGAACACCAACACCA 1233679
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||| | ||||| | ||| | || ||| ||||| || |||| || |
Sbjct 1233678 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGA-ACGGGGTAGTAGTTCACAT 1233621
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654
|||| | ||||||||| | ||| |||||||| ||| | | || | |
Sbjct 1233620 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTGGTAACATCGTGAAGCT 1233570
Query 221655 TG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
| || || | || ||| |||| | || ||||| || || || |
Sbjct 1233569 TCTTAAAGTCA--TAGCAGCCTTCGTTATAG---TCGACAAAGGCAGGGAGAGCCAAAGA 1233515
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
||||| ||| || || || |||||||| | | |||| | |||||| || |||||
Sbjct 1233514 GGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAG 1233455
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
|||| || |||||| ||||||| || || || |||||| ||| || |||||
Sbjct 1233454 GTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTT 1233395
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||| ||||||||||| |||||||| ||| ||| | || || || ||| || |
Sbjct 1233394 GTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCT- 1233336
Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945
|||| || | | ||| | |||| | | |||| ||| ||||||
Sbjct 1233335 TCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATAC------- 1233283
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
||||| | | || | ||| || || || | ||||| || || | ||| ||||
Sbjct 1233282 AGAGCCT--CGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1233225
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
||| | |||||| | ||| | | || | || |||||| || || |||||||| || |
Sbjct 1233224 TCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAG 1233165
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | || || || | || || ||| ||| ||||| ||| || | || || | |
Sbjct 1233164 CGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGA 1233105
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
||||||| | || |||||||| ||||| || |||| ||| | || || || |||||||
Sbjct 1233104 ACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGT 1233045
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGT 222244
|||||||||| || || || | || | |||||||| ||||| | || | |
Sbjct 1233044 TGCCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATA 1232986
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302
|||||||| |||||||||||| |||||| | || || | || ||| |||
Sbjct 1232985 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCAC---GGATACGGTGG 1232929
Query 222303 CAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
| || |||||||||||| || || || |||||||| || |||| ||||||||
Sbjct 1232928 ACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCG 1232869
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
||| ||||| || ||| ||||| | || || ||| || || || |||| ||||| |
Sbjct 1232868 TAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCT 1232809
Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481
| | || || ||||| || || |||||| ||| || |||||| | || |||||
Sbjct 1232808 TGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATG 1232749
Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA--TGGCGCATC 222539
|| | ||| ||||| | ||| | | |||||||| || || | || | | || |
Sbjct 1232748 AGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC-CCAAACGCCAACAGCCACA-C 1232691
Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597
||| ||||| ||| || | ||| ||| || | |||| || || || ||
Sbjct 1232690 GCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGATATGA 1232633
Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657
||||| |||||||| || ||||| | | || ||||||| | ||| || | |||
Sbjct 1232632 CCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGC 1232573
Query 222658 GGCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 1232572 AGAGTCAAGCTCCTCCTTGTG 1232552
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 1234090 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 1234031
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || || ||||||||||||||||| | |||||||| ||||||||||| || ||
Sbjct 1234030 CTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGAC 1233971
Query 221236 CAGCAGACTGTTGCG 221250
|||| |||||||||
Sbjct 1233970 GAGCAAACTGTTGCG 1233956
>seq7
Length=2824016
Score = 232 bits (256), Expect = 1e-55
Identities = 566/858 (66%), Gaps = 24/858 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||| ||||| | || |||||||||||||||||||||||||
Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| |||| || || || | | |||||| || | || ||
Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 1202691
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | ||||| |||||||| ||||| || || || || |||||||| ||| |||| |
Sbjct 1202692 TCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 1202751
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | | || || ||| | ||||| || ||||||||||||||||| ||
Sbjct 1202752 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 1202811
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
|| || | ||||| ||| || || ||| | || ||| | | || |
Sbjct 1202812 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAG 1202871
Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832
| || | | || || ||||| ||| ||| || ||||| | ||||||
Sbjct 1202872 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGA 1202931
Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||||| ||||||||| | | || | || | |||| |||| || || |||||
Sbjct 1202932 CTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTT 1202991
Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
|||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| |
Sbjct 1202992 TGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 1203051
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
|| || |||||| || ||| ||| ||||||||||||||| | |||||||||||
Sbjct 1203052 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 1203111
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCAA 26070
|||| || ||||| ||||||||| || | ||| || | || | | |||
Sbjct 1203112 GCACACCGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCAA 1203165
Query 26071 -GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125
|||| |||| | ||||||| || || || |||||| | || ||
Sbjct 1203166 GGAGATTATCCGTGAA----ATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGA 1203221
Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185
||||||||||| || || |||| || |||||||
Sbjct 1203222 CCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTG 1203281
Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244
||| ||| ||||| | |||||| | || || || | | ||| ||| | ||
Sbjct 1203282 AGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCC- 1203340
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
||||| || ||||| ||||| ||||| || ||| || |||||||||||||| || |||
Sbjct 1203341 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 1203400
Query 26305 AGGGTCGGCGACTATCAA 26322
| |||||||| || |||
Sbjct 1203401 CGTGTCGGCGAGTACCAA 1203418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844532957120
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