Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 253 4e-62 seq7 232 1e-55 >seq1 Length=7294945 Score = 253 bits (280), Expect = 4e-62 Identities = 841/1281 (66%), Gaps = 59/1281 (5%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||||||||||||||||||||||||||| |||||| | ||| | || ||||| || Sbjct 1233795 AGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAA-CTCGCGAGCTTCGGGTGA 1233737 Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| || | |||||| | | ||||| |||| || || ||||| || || | ||| Sbjct 1233736 TTCGAAAGGAAGACGCAG-AGCGAGGAAAG-CGTCAGCAAGACCCTGAACACCAACACCA 1233679 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | ||||| | ||| | || ||| ||||| || |||| || | Sbjct 1233678 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGA-ACGGGGTAGTAGTTCACAT 1233621 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||||||| | ||| |||||||| ||| | | || | | Sbjct 1233620 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTGGTAACATCGTGAAGCT 1233570 Query 221655 TG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | || || | || ||| |||| | || ||||| || || || | Sbjct 1233569 TCTTAAAGTCA--TAGCAGCCTTCGTTATAG---TCGACAAAGGCAGGGAGAGCCAAAGA 1233515 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || |||||||| | | |||| | |||||| || ||||| Sbjct 1233514 GGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAG 1233455 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || |||||| ||||||| || || || |||||| ||| || ||||| Sbjct 1233454 GTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTT 1233395 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| |||||||| ||| ||| | || || || ||| || | Sbjct 1233394 GTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCT- 1233336 Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 |||| || | | ||| | |||| | | |||| ||| |||||| Sbjct 1233335 TCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATAC------- 1233283 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | || | ||| || || || | ||||| || || | ||| |||| Sbjct 1233282 AGAGCCT--CGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1233225 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 ||| | |||||| | ||| | | || | || |||||| || || |||||||| || | Sbjct 1233224 TCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAG 1233165 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | || || ||| ||| ||||| ||| || | || || | | Sbjct 1233164 CGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGA 1233105 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || |||||||| ||||| || |||| ||| | || || || ||||||| Sbjct 1233104 ACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGT 1233045 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || || || | || | |||||||| ||||| | || | | Sbjct 1233044 TGCCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATA 1232986 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 |||||||| |||||||||||| |||||| | || || | || ||| ||| Sbjct 1232985 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCAC---GGATACGGTGG 1232929 Query 222303 CAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||||||||| || || || |||||||| || |||| |||||||| Sbjct 1232928 ACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCG 1232869 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || ||| ||||| | || || ||| || || || |||| ||||| | Sbjct 1232868 TAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCT 1232809 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || || ||||| || || |||||| ||| || |||||| | || ||||| Sbjct 1232808 TGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATG 1232749 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA--TGGCGCATC 222539 || | ||| ||||| | ||| | | |||||||| || || | || | | || | Sbjct 1232748 AGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC-CCAAACGCCAACAGCCACA-C 1232691 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| ||| || | ||| ||| || | |||| || || || || Sbjct 1232690 GCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGATATGA 1232633 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 ||||| |||||||| || ||||| | | || ||||||| | ||| || | ||| Sbjct 1232632 CCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGC 1232573 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 1232572 AGAGTCAAGCTCCTCCTTGTG 1232552 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 1234090 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 1234031 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || || ||||||||||||||||| | |||||||| ||||||||||| || || Sbjct 1234030 CTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGAC 1233971 Query 221236 CAGCAGACTGTTGCG 221250 |||| ||||||||| Sbjct 1233970 GAGCAAACTGTTGCG 1233956 >seq7 Length=2824016 Score = 232 bits (256), Expect = 1e-55 Identities = 566/858 (66%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | || ||||||||||||||||||||||||| Sbjct 1202573 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 1202632 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 1202633 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 1202691 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | ||||| |||||||| ||||| || || || || |||||||| ||| |||| | Sbjct 1202692 TCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 1202751 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 1202752 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 1202811 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||| | | || | Sbjct 1202812 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAG 1202871 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || ||||| ||| ||| || ||||| | |||||| Sbjct 1202872 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGA 1202931 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| ||||||||| | | || | || | |||| |||| || || ||||| Sbjct 1202932 CTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTT 1202991 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| | Sbjct 1202992 TGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 1203051 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || || |||||| || ||| ||| ||||||||||||||| | ||||||||||| Sbjct 1203052 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 1203111 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCAA 26070 |||| || ||||| ||||||||| || | ||| || | || | | ||| Sbjct 1203112 GCACACCGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCAA 1203165 Query 26071 -GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| |||| | ||||||| || || || |||||| | || || Sbjct 1203166 GGAGATTATCCGTGAA----ATCATCACTGATGCCGTCAGAATCGAGCAAGAATTCTTGA 1203221 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 ||||||||||| || || |||| || ||||||| Sbjct 1203222 CCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTG 1203281 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244 ||| ||| ||||| | |||||| | || || || | | ||| ||| | || Sbjct 1203282 AGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCC- 1203340 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||| ||||| ||||| || ||| || |||||||||||||| || ||| Sbjct 1203341 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 1203400 Query 26305 AGGGTCGGCGACTATCAA 26322 | |||||||| || ||| Sbjct 1203401 CGTGTCGGCGAGTACCAA 1203418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844532957120