Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-13 >seq6 Length=3085841 Score = 93.3 bits (102), Expect = 3e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || |||||||| ||||| || || ||||| || || ||||||||| Sbjct 760781 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 760840 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || |||||||| || ||||| || ||| || ||||| || | | | | Sbjct 760841 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCA-C 760899 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || |||||||| ||||| ||||| ||||| Sbjct 760900 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 760944 Score = 87.8 bits (96), Expect = 1e-11 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||||||||| || ||||| ||||| ||| || || | || ||||| ||| || | Sbjct 760446 ACGAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGG 760504 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | || ||||| ||||| |||||||| || ||||| || || || ||||| || | Sbjct 760505 TGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATAC 760564 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| || ||||| ||||| ||||| ||||| | || | | | | Sbjct 760565 CCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCGACCT-CG 760623 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || || |||||||||||||| |||| Sbjct 760624 AGAGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 760657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178213418404