Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 seq7 104 3e-17 >seq1 Length=7294945 Score = 260 bits (288), Expect = 2e-64 Identities = 978/1502 (65%), Gaps = 45/1502 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| || || | ||| | || || ||||||| |||| Sbjct 1232672 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1232731 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329 | ||||||||| || |||||| || | | || | || || | || ||||||| Sbjct 1232732 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1232789 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| |||||||| ||| | | ||| ||||| |||||||| | | || ||||| | Sbjct 1232790 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1232849 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | |||||||| | ||||| | | ||||| || || ||| ||||| Sbjct 1232850 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1232909 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || || |||| | | | || | ||| ||| || || | Sbjct 1232910 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1232969 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 1232970 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1233029 Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || || || | || ||||| | || || ||||| Sbjct 1233030 TCGACCAGG-GTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1233088 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 |||||| || | ||||||||||| | || ||||| || | ||||||| || ||| Sbjct 1233089 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGG-TCCGTGC 1233147 Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || || || | || ||||| || || || ||||||||||| |||||| || Sbjct 1233148 CCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAA 1233207 Query 75745 --TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGG 75800 ||| | ||| || | | || || || || || || || || | ||| || ||| Sbjct 1233208 CTTGGAC--TGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGG 1233264 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGA 75857 || || || || || || || ||||| || ||||||| | | ||| || Sbjct 1233265 C-GAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GA 1233320 Query 75858 CTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | | ||| | || | | ||| | | || || | | ||||| |||||||| | Sbjct 1233321 CTATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1233379 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | |||||||||||||||||| || ||| ||||| ||||| ||||| ||||||| Sbjct 1233380 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1233439 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || || ||||| || || | |||||| | | || ||| ||| Sbjct 1233440 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCT 1233499 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGA-GACTCGCAC 76092 || ||||| ||||| || | || || || | |||| | | | || | || || Sbjct 1233500 GTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGACTATAACGAAGGCT-GC-- 1233556 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | | || ||||| || | || ||| | ||| | || || ||||| | Sbjct 1233557 -TATGACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCAT 1233615 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| || || | || |||||| || || || || ||| | || ||| |||| Sbjct 1233616 CATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACC 1233675 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTG 76271 |||||| | |||||||| ||||| || || | || | | ||| || | | || | Sbjct 1233676 CATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTC-CTTTCG 1233734 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | ||| ||||| ||| |||| | |||||||| ||||| || ||||| ||| Sbjct 1233735 AATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCC 1233794 Query 76332 TGGAGGCGAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCCT-ATGAGACATTTGAGGGTTC 76389 | ||||| | || |||| | ||| | ||| |||| ||||| |||| |||| || Sbjct 1233795 TCGAGGCATCTATGGAGATTGCC--AAGATCGAGGGTCCTTATGAGTCATTCAAGGGATC 1233852 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 ||||| || |||| | || |||||||| ||||||| | | || || | || | || Sbjct 1233853 ACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATG-TCAAGCCCA-CTGACCTG 1233910 Query 76450 CG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | | ||||| |||||||| | || |||||| | ||| |||| |||||| | | Sbjct 1233911 TGGGAGTGGGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTC 1233970 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||| ||| | || ||| |||| || ||||||||||| || Sbjct 1233971 GTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAG 1234030 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | |||||||||| | || | ||| || || ||||| |||||||| Sbjct 1234031 CCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 1234090 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 || |||| || || | | ||| ||||||||| | | ||||||| | | | Sbjct 1234091 CCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGC 1234150 Query 76688 AT 76689 || Sbjct 1234151 AT 1234152 >seq7 Length=2824016 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| ||||| ||||||| ||||| |||||||||| | || |||| Sbjct 1202609 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 1202668 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| ||||| |||| |||||||||| ||||| || ||| Sbjct 1202669 GATGACGAGAAGTACTTCATCTCTCACATCTTGGCTTTCTTTGCTGCCTCCGACGGCATT 1202728 Query 64831 GTTTTTGAGAATATCAATAACAATTTT-GCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | ||| |||| || || ||||| ||| || || | Sbjct 1202729 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGC-GAGGTTCAGATCCCCGAGGCTCGATG 1202787 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 1202788 CTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 1202846 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-AGTTATTTGAAGCCATCCAAACT 65007 | |||| ||| | ||||| | | | | | | | | || | ||||| | || Sbjct 1202847 TCGACACCTACGTCAAGGA-GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACC 1202905 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 | || || || |||||||| | ||||| || || ||| | | |||| | ||| Sbjct 1202906 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 1202965 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| || |||||||| |||| ||||| || ||||||||||||||| ||| | Sbjct 1202966 -TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGC 1203024 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | ||| | |||||| | ||||||||||| ||||| |||||| || Sbjct 1203025 CTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAA 1203084 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || |||||||| ||| || ||||| Sbjct 1203085 CGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGC 1203126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569428486240