Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 264 1e-65 seq6 174 2e-38 >seq3 Length=5619901 Score = 264 bits (292), Expect = 1e-65 Identities = 555/825 (67%), Gaps = 13/825 (2%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| ||||| || | ||||| || || |||||||| ||||| || |||||| | || Sbjct 3988893 GCTCTGCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGAACCCTTTCTTCTTCTGCC 3988834 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || ||||||| || || | || || || |||||||||| || | || ||| Sbjct 3988833 CAGACCTCCATTGAGATCGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACC 3988774 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | ||| | || | || | || || || Sbjct 3988773 CGTGCCCGTTTCGAGGAGCTGTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 3988714 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| || || ||||| || ||||| |||| | || || ||||| || || Sbjct 3988713 CGTGTCCTTGCCGATGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTCGTCGGT 3988654 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| |||||||| || || || || | || | || |||||| || || Sbjct 3988653 GGATCCACCCGTATCCCCCGTATCCAGAAGCTCATTACCGACTACTTCAACGGCAAGGAG 3988594 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 3988593 CCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCT 3988534 Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472 || || || || ||||| | | | ||||| ||||| ||||| || |||| Sbjct 3988533 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAACGAGATC--CTGCTTCTCGATG 3988479 Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532 | || ||| | || || ||| | || || || ||||| | ||||| || | || Sbjct 3988478 TCGCTCCCCTGTCTCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCC 3988419 Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592 | ||||| || || || || |||||| | ||||| || || | || || || || | Sbjct 3988418 GCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGC 3988359 Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652 | ||||| | ||| || || || || || || || || | ||||| ||| | || | Sbjct 3988358 CCGGTGTCCTTATCCAGGTCTACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTC 3988299 Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712 | || | ||||| | || || || || | || || | |||||||| |||||| | | Sbjct 3988298 TCGGCAAGTTCGAGCTCACTGGCATCCCCCCCGCCCCTCGTGGTGTTCCCCAGATTGAGG 3988239 Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772 | |||||| | || || || || || | |||||| | || | || |||| ||| Sbjct 3988238 TCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACTG 3988179 Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832 |||| || | |||||||| || ||||| |||||||| || || || |||||||| |||| Sbjct 3988178 GCAAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTG 3988119 Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | || ||| || ||||| || ||||||| ||| || || |||| Sbjct 3988118 AGCGCATGCTTTCCGATGCCGAGAAGTACAAGGAGGAGGATGAGG 3988074 Score = 239 bits (264), Expect = 6e-58 Identities = 500/736 (68%), Gaps = 7/736 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 3989706 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 3989648 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || || | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 3989647 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 3989588 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 3989587 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 3989528 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | |||||||||||||| | ||| | || || | || || Sbjct 3989527 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCCGAGGTTCAGGCTGACAT 3989468 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 3989467 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCT-CCAAGCCCGTCGTCGAGGTCGA 3989411 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||| || | || ||||||| || || || || ||| | ||| || Sbjct 3989410 GTTCAAGGGCGAGACCAAGAACTTCACTCCCGAGGAGATCTCCTCCATGATCCTGACCAA 3989351 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || | | | |||| | || || || | || || || ||||| Sbjct 3989350 GATGCGTGAGACCGCCGAGGCCTACCTGGGCACCACCGTCAACAACGCCGTCGTCACTGT 3989291 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 3989290 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 3989231 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| ||||| || ||||| || Sbjct 3989230 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTGA 3989171 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||||| || | || || || | ||||| ||||| || |||||||| || || Sbjct 3989170 CAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGTGGTACTTTCGA 3989111 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 |||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| || Sbjct 3989110 TGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 3989051 Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCC 196022 ||| | |||||||| |||||||| ||||| || || |||||| | |||||| Sbjct 3989050 TCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTCA 3988992 Query 196023 GTCGAAAGAATAAGAA 196038 || ||||| ||||| Sbjct 3988991 AGCGCAAGAACAAGAA 3988976 Score = 134 bits (148), Expect = 2e-26 Identities = 476/734 (65%), Gaps = 21/734 (3%) Strand=Plus/Plus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||||| ||||| ||||| ||||||| || | || || ||||| || ||||||||| Sbjct 2068330 GCCGTTGTCACTGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 2068389 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| | || | ||| | || ||||| || || || || || || ||| Sbjct 2068390 GGTCAGATTGCTGACCTTGATGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATT 2068449 Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||||| | |||| || | || || || |||||| ||||| Sbjct 2068450 GCCTACGGTCTGGGCTCCGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 2068509 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || ||||| || || |||| || | || ||| | ||| || ||| Sbjct 2068510 GGTGGTGGTACTTTCGATGTTTCCCTGCTCAGCATCCAGGGCGGTGTCTTCACTGTCAAG 2068569 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 ||||| |||||||| || || | ||||| | || ||||| | | | | | | | Sbjct 2068570 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 2068628 Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063 || | | |||||| || ||| ||||| | | | | || | || | ||| Sbjct 2068629 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 2068686 Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121 || || | || | ||||| || || |||||||| || || ||||| | || || | Sbjct 2068687 CTCCGAAGACTCCGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 2068744 Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181 | | | |||||||||| || | || || || |||||| | || || |||| Sbjct 2068745 AGGCCACCATTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCC 2068804 Query 196182 GTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT-TAGGAAGTGTA---TGGAACCTGTT 196237 |||| ||||| || ||| | ||| | | || | | ||| | || |||||| Sbjct 2068805 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCCG----GTACCCTCGAGCCTGTT 2068860 Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297 | || || || || || ||||| ||| ||||| || |||||||| || Sbjct 2068861 GCTCAGGTCCTCAAGGATGCCGCTATGGAGAAGAGCGCCGTTGAGGAGATTGTCCTCGTC 2068920 Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357 || || || |||||||| || ||||| || || | || || |||||| || || Sbjct 2068921 GGTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGATGGCAAG 2068980 Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417 | | | || | |||||||| ||||| || || || || ||||| ||||| ||||| Sbjct 2068981 AAGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCC 2069040 Query 196418 GCTATTCTCTCAGG 196431 | ||| ||||| || Sbjct 2069041 GGTATCCTCTCCGG 2069054 Score = 86.0 bits (94), Expect = 8e-12 Identities = 214/318 (67%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 198441 ACTACGCGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATT 198500 || || |||||| | ||||| | || |||| || || || ||||| ||||| || Sbjct 4256881 ACAACTCGATTCGACGATGTCCATGGATGCGACGAGGCCAAAGAAGAGCTACAGGAGGTT 4256940 Query 198501 GTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGT 198560 || || ||||| |||||||||| | || || ||||| | || ||| Sbjct 4256941 GTCGAATTTCTCCGCAACCCCGAAAGTTTCTCTGACCTCGGTGCTAAGCTGCCCAAAGGT 4257000 Query 198561 GCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGT 198620 | | | || | ||| |||| |||||||| || || ||||| ||||||||| | || || Sbjct 4257001 GTTTTGCTGGTTGGTCCCCCCGGTACTGGAAAGACGCTTCTCGCTCGTGCTGTTGCCGGA 4257060 Query 198621 GAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTG 198678 ||| | | || || || ||| || || | || | || || | ||| || || || | Sbjct 4257061 GAAGCTGGCGTTCCTTTCTTCTACA-TGTCCGGCAGTGAATTCGA-CGAAATCTTTGTCG 4257118 Query 198679 GTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGA-GCAAGCACGTGAAAATCAACCATG- 198736 ||||||| || || ||||| || ||||| |||| || || | || || || || Sbjct 4257119 GTGTTGGAGCCAAACGCGTTCGAGAACTGTTTGCTGCGGCCAAGGCCAAGTC--CCCTGC 4257176 Query 198737 TATCATCTTCATTGATGA 198754 ||||||||||||||| || Sbjct 4257177 TATCATCTTCATTGACGA 4257194 >seq6 Length=3085841 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 1398279 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1398338 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 1398339 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1398398 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || ||||||||||| ||||| || ||||| || ||||| || |||||| Sbjct 1398399 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 1398458 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| || || ||||| || || | || || ||||||| Sbjct 1398459 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTG 1398507 Score = 165 bits (182), Expect = 1e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || || || || || || || ||||| |||||||| ||||| || || || || || Sbjct 760655 GTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 760596 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || ||||| ||||| || || || Sbjct 760595 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 760536 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 ||||||||||| |||||||| || || || ||||| ||||||||| | || |||||| Sbjct 760535 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 760476 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || |||||||| || | ||||| |||||| Sbjct 760475 TCTACCCTTCACCTTGTCCTTCGTCTTCGTGGTGGT 760440 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||||| || || ||||| |||||||| || || ||| Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || || || || ||||| || || || | || |||||| Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || |||||| Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGGT 760720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862210864560