Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03-
01] 23 sequences; 37,316,984 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq3 264 1e-65
seq6 174 2e-38
>seq3
Length=5619901
Score = 264 bits (292), Expect = 1e-65
Identities = 555/825 (67%), Gaps = 13/825 (2%)
Strand=Plus/Minus
Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120
||||| ||||| || | ||||| || || |||||||| ||||| || |||||| | ||
Sbjct 3988893 GCTCTGCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGAACCCTTTCTTCTTCTGCC 3988834
Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180
|| || ||||||| || || | || || || |||||||||| || | || |||
Sbjct 3988833 CAGACCTCCATTGAGATCGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACC 3988774
Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240
||||| ||||| || ||| | | ||| | || | || | || || ||
Sbjct 3988773 CGTGCCCGTTTCGAGGAGCTGTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 3988714
Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300
| || ||| || || ||||| || ||||| |||| | || || ||||| || ||
Sbjct 3988713 CGTGTCCTTGCCGATGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTCGTCGGT 3988654
Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360
||||| |||||||| || || || || | || | || |||||| || ||
Sbjct 3988653 GGATCCACCCGTATCCCCCGTATCCAGAAGCTCATTACCGACTACTTCAACGGCAAGGAG 3988594
Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420
||||| | |||||||| ||||| || ||||| || ||||| ||||| |||||||||
Sbjct 3988593 CCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCT 3988534
Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472
|| || || || ||||| | | | ||||| ||||| ||||| || ||||
Sbjct 3988533 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAACGAGATC--CTGCTTCTCGATG 3988479
Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532
| || ||| | || || ||| | || || || ||||| | ||||| || | ||
Sbjct 3988478 TCGCTCCCCTGTCTCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCC 3988419
Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592
| ||||| || || || || |||||| | ||||| || || | || || || || |
Sbjct 3988418 GCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGC 3988359
Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652
| ||||| | ||| || || || || || || || || | ||||| ||| | || |
Sbjct 3988358 CCGGTGTCCTTATCCAGGTCTACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTC 3988299
Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712
| || | ||||| | || || || || | || || | |||||||| |||||| | |
Sbjct 3988298 TCGGCAAGTTCGAGCTCACTGGCATCCCCCCCGCCCCTCGTGGTGTTCCCCAGATTGAGG 3988239
Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772
| |||||| | || || || || || | |||||| | || | || |||| |||
Sbjct 3988238 TCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACTG 3988179
Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832
|||| || | |||||||| || ||||| |||||||| || || || |||||||| ||||
Sbjct 3988178 GCAAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTG 3988119
Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
| || ||| || ||||| || ||||||| ||| || || ||||
Sbjct 3988118 AGCGCATGCTTTCCGATGCCGAGAAGTACAAGGAGGAGGATGAGG 3988074
Score = 239 bits (264), Expect = 6e-58
Identities = 500/736 (68%), Gaps = 7/736 (1%)
Strand=Plus/Minus
Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363
|||||||| | || ||||| ||||| || || ||| | | | | || || ||| ||
Sbjct 3989706 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 3989648
Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423
|| || | || ||||| || ||||| || || || |||| ||||||||| || || |
Sbjct 3989647 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 3989588
Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483
|| ||||| |||| |||||||| || || ||| || |||||||| || || ||
Sbjct 3989587 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 3989528
Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543
||| ||||| ||||| | |||||||||||||| | ||| | || || | || ||
Sbjct 3989527 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCCGAGGTTCAGGCTGACAT 3989468
Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603
||| ||| | | | ||| | || | |||| ||||| | | | || ||
Sbjct 3989467 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCT-CCAAGCCCGTCGTCGAGGTCGA 3989411
Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663
|| | || |||| || | || ||||||| || || || || ||| | ||| ||
Sbjct 3989410 GTTCAAGGGCGAGACCAAGAACTTCACTCCCGAGGAGATCTCCTCCATGATCCTGACCAA 3989351
Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723
|||| ||||| || || | | | |||| | || || || | || || || |||||
Sbjct 3989350 GATGCGTGAGACCGCCGAGGCCTACCTGGGCACCACCGTCAACAACGCCGTCGTCACTGT 3989291
Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783
|| || ||||||| || || || ||||| || |||||||| | | ||||| ||
Sbjct 3989290 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 3989231
Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843
||| ||| || | || ||||| || || || || ||||| ||||| || ||||| ||
Sbjct 3989230 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTGA 3989171
Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903
|||||| || | || || || | ||||| ||||| || |||||||| || ||
Sbjct 3989170 CAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGTGGTACTTTCGA 3989111
Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963
|||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 3989110 TGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 3989051
Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCC 196022
||| | |||||||| |||||||| ||||| || || |||||| | ||||||
Sbjct 3989050 TCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTCA 3988992
Query 196023 GTCGAAAGAATAAGAA 196038
|| ||||| |||||
Sbjct 3988991 AGCGCAAGAACAAGAA 3988976
Score = 134 bits (148), Expect = 2e-26
Identities = 476/734 (65%), Gaps = 21/734 (3%)
Strand=Plus/Plus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|| ||||| ||||| ||||| ||||||| || | || || ||||| || |||||||||
Sbjct 2068330 GCCGTTGTCACTGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 2068389
Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829
| | ||||| | || | ||| | || ||||| || || || || || || |||
Sbjct 2068390 GGTCAGATTGCTGACCTTGATGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATT 2068449
Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886
|| || ||||||| | |||| || | || || || |||||| |||||
Sbjct 2068450 GCCTACGGTCTGGGCTCCGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 2068509
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
||||||||||| || ||||| || || |||| || | || ||| | ||| || |||
Sbjct 2068510 GGTGGTGGTACTTTCGATGTTTCCCTGCTCAGCATCCAGGGCGGTGTCTTCACTGTCAAG 2068569
Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006
||||| |||||||| || || | ||||| | || ||||| | | | | | | |
Sbjct 2068570 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 2068628
Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063
|| | | |||||| || ||| ||||| | | | | || | || | |||
Sbjct 2068629 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 2068686
Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121
|| || | || | ||||| || || |||||||| || || ||||| | || || |
Sbjct 2068687 CTCCGAAGACTCCGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 2068744
Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181
| | | |||||||||| || | || || || |||||| | || || ||||
Sbjct 2068745 AGGCCACCATTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCC 2068804
Query 196182 GTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT-TAGGAAGTGTA---TGGAACCTGTT 196237
|||| ||||| || ||| | ||| | | || | | ||| | || ||||||
Sbjct 2068805 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCCG----GTACCCTCGAGCCTGTT 2068860
Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297
| || || || || || ||||| ||| ||||| || |||||||| ||
Sbjct 2068861 GCTCAGGTCCTCAAGGATGCCGCTATGGAGAAGAGCGCCGTTGAGGAGATTGTCCTCGTC 2068920
Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357
|| || || |||||||| || ||||| || || | || || |||||| || ||
Sbjct 2068921 GGTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGATGGCAAG 2068980
Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417
| | | || | |||||||| ||||| || || || || ||||| ||||| |||||
Sbjct 2068981 AAGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCC 2069040
Query 196418 GCTATTCTCTCAGG 196431
| ||| ||||| ||
Sbjct 2069041 GGTATCCTCTCCGG 2069054
Score = 86.0 bits (94), Expect = 8e-12
Identities = 214/318 (67%), Gaps = 8/318 (3%)
Strand=Plus/Plus
Query 198441 ACTACGCGATTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATT 198500
|| || |||||| | ||||| | || |||| || || || ||||| ||||| ||
Sbjct 4256881 ACAACTCGATTCGACGATGTCCATGGATGCGACGAGGCCAAAGAAGAGCTACAGGAGGTT 4256940
Query 198501 GTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGT 198560
|| || ||||| |||||||||| | || || ||||| | || |||
Sbjct 4256941 GTCGAATTTCTCCGCAACCCCGAAAGTTTCTCTGACCTCGGTGCTAAGCTGCCCAAAGGT 4257000
Query 198561 GCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGT 198620
| | | || | ||| |||| |||||||| || || ||||| ||||||||| | || ||
Sbjct 4257001 GTTTTGCTGGTTGGTCCCCCCGGTACTGGAAAGACGCTTCTCGCTCGTGCTGTTGCCGGA 4257060
Query 198621 GAATCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTG 198678
||| | | || || || ||| || || | || | || || | ||| || || || |
Sbjct 4257061 GAAGCTGGCGTTCCTTTCTTCTACA-TGTCCGGCAGTGAATTCGA-CGAAATCTTTGTCG 4257118
Query 198679 GTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGA-GCAAGCACGTGAAAATCAACCATG- 198736
||||||| || || ||||| || ||||| |||| || || | || || || ||
Sbjct 4257119 GTGTTGGAGCCAAACGCGTTCGAGAACTGTTTGCTGCGGCCAAGGCCAAGTC--CCCTGC 4257176
Query 198737 TATCATCTTCATTGATGA 198754
||||||||||||||| ||
Sbjct 4257177 TATCATCTTCATTGACGA 4257194
>seq6
Length=3085841
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || || || || ||||| || || || || |||||||| ||||| ||||| ||
Sbjct 1398279 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1398338
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || |||
Sbjct 1398339 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1398398
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| ||| | || ||||||||||| ||||| || ||||| || ||||| || ||||||
Sbjct 1398399 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 1398458
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| || || ||||| || || | || || |||||||
Sbjct 1398459 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTG 1398507
Score = 165 bits (182), Expect = 1e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || || || || || || || ||||| |||||||| ||||| || || || || ||
Sbjct 760655 GTCAAGACTCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATTGAC 760596
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
||| |||| ||||||| || || ||||| || || || ||||| ||||| || || ||
Sbjct 760595 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 760536
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
||||||||||| |||||||| || || || ||||| ||||||||| | || ||||||
Sbjct 760535 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 760476
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| || |||||||| || | ||||| ||||||
Sbjct 760475 TCTACCCTTCACCTTGTCCTTCGTCTTCGTGGTGGT 760440
Score = 163 bits (180), Expect = 4e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || || ||||| || || || || |||||||||||||| ||||| ||
Sbjct 760947 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 760888
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || ||||||| || || ||||| |||||||| || || |||
Sbjct 760887 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 760828
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || ||||| || || || || ||||| || || || | || ||||||
Sbjct 760827 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 760768
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || ||||||
Sbjct 760767 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGGT 760720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862210864560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |