Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 127 6e-24 seq3 122 3e-22 seq1 118 3e-21 seq6 102 2e-16 >seq7 Length=2824016 Score = 127 bits (140), Expect = 6e-24 Identities = 251/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || || ||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 1202759 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 1202818 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || || || || || || || || ||| |||| || | |||| Sbjct 1202819 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAGCCAGCGC 1202878 Query 133409 CACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 || | || |||||||||||| | || ||||||| || ||||| |||||||||| Sbjct 1202879 AACTACCTCTTCAACGCCATT-GAGACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGC 1202937 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 || || ||||||||||||||| | |||||| || || ||||| ||||||| Sbjct 1202938 CATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGC 1202997 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 || ||||| || || ||||| || || || ||| || || ||||| || ||| | || Sbjct 1202998 CGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGG 1203057 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | ||||| ||| || || ||||| || || || | ||||||| || ||||| Sbjct 1203058 TCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACAC 1203117 Query 133648 CGAATTTGC 133656 ||| ||||| Sbjct 1203118 CGACTTTGC 1203126 >seq3 Length=5619901 Score = 122 bits (134), Expect = 3e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | ||| | |||||| |||||||| | ||| || ||||| |||||||| ||| Sbjct 2016058 TTGACGAGACGTCTCTGAATGTAACCAGTCTCGGCTGTCTTGACAGCGGTATCAATAAGA 2015999 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || ||||||| |||| || |||||||| | ||| ||| || || | | | | Sbjct 2015998 CCTTCACGACCGGCCATGGCGTGGAAGAAAAATTCTGACGGAGTAAGGCCACGGAGATAC 2015939 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| |||| || || || || ||||| || || | ||| |||||| || || || || Sbjct 2015938 GAGTTCTCTACAAAGCCGCGAGCCTCTGGAGAGTAATCGTCCTTGGTGAAATGAGGAAGC 2015879 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || || ||||| |||| ||||||||||| || || |||||||||| | | Sbjct 2015878 GTTCGGTACTTGAAGCCGAATGGAATACGCTTTCCTTCGACAATCTGCTGTCCGACAAGC 2015819 Query 302824 GAAATCATCTGCGAAATATT 302843 | |||| || |||||||| Sbjct 2015818 GCTGTCATTTGAGAAATATT 2015799 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||| | ||||||||| Sbjct 2016847 AGAATTTCCTTGAGACGAGGCACACCAAGTGTGACGTT---CTTGGAAGACACACCAGCA 2016791 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || || | || |||||||| || ||||||| Sbjct 2016790 AAATGGAAAGTATTCAGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGA 2016731 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 2016730 ACACCAACCATTTCACCAGG 2016711 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCAT---- 233327 |||||| | ||||||| |||||||||||||||||| || | ||| |||||||| | Sbjct 4005457 AGCACCATAGGCAATCAGACAATCACGTTCCATTTCTCCTAGACGAAGACCACCGTCCCG 4005516 Query 233328 CATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGAT 233387 | | ||||| | ||| |||| ||||| |||| | ||| || || |||||||| Sbjct 4005517 CGATCGACCTTCGGTGGGCTGT----CGAGTCAAAATGGCTCTGGGGCCGCGAGCACGAG 4005572 Query 233388 AATTAATTTTATCTTTAACCATATGCTTCAG 233418 | | || || |||| ||||| |||||||| Sbjct 4005573 AGTGCATCTTGTCTTGCACCATGTGCTTCAG 4005603 Score = 84.2 bits (92), Expect = 6e-11 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| ||||| | | ||||| ||||||||| |||||||| || | |||||||| Sbjct 4005447 GAAGCTGAGAAGCACCATAGGCAATCAGACAATCACGTTCCATTTCTCCTAGACGAAGAC 4005506 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 |||| || || | | ||| |||| ||||| ||||| | | | | | || ||| | Sbjct 4005507 CACCGTCCCGCGATCGACCTTCGGTGGGCTGTCGAGTCAAAATGGCTCTGGGGCCGCGAG 4005566 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 || || ||| || | ||||| ||||| ||||| |||||| | || ||| Sbjct 4005567 CACGAGAGTGCATCTTGTCTTGCACCATGTGCTTCAGACGTTGGTAGTAGATTGGGCCGT 4005626 Query 251654 TGAAGATG 251661 |||||||| Sbjct 4005627 TGAAGATG 4005634 >seq1 Length=7294945 Score = 118 bits (130), Expect = 3e-21 Identities = 555/877 (63%), Gaps = 11/877 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || |||||| ||| ||||| || || |||||| || | ||||||||||| Sbjct 1233478 GTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTT 1233419 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || || | ||| | || ||||| |||| || Sbjct 1233418 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGC 1233359 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | | || || |||| |||| ||| Sbjct 1233358 CTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTT 1233299 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||||| | | | || || || || || ||| || |||||||| Sbjct 1233298 CTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCA 1233239 Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926 | | |||||| | || | ||| | || || | | |||||| ||| || | Sbjct 1233238 TTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAACAG 1233182 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | ||| ||| ||||| | || ||| || | |||||| || Sbjct 1233181 ATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTT 1233122 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||| | || ||||| || || || ||||| Sbjct 1233121 CTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAA 1233062 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || || || | ||||| || |||||||| | Sbjct 1233061 GGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCG 1233002 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || || ||||| ||||| || || ||||| ||| ||| | || || | | Sbjct 1233001 AAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGC 1232942 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | | || | | || || |||||||| | |||| || ||||| || ||| Sbjct 1232941 ACGGATACGGTGGACGTTCAGGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATG 1232883 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||||| ||| | | | ||||| ||||| || || | ||| | || |||| | Sbjct 1232882 TCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATG 1232823 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | |||| | |||| || ||||||||||| || || || | ||||| |||| Sbjct 1232822 AGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGA 1232763 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 | || | ||||| | ||||||||| | ||||| || || || | Sbjct 1232762 ATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGC 1232703 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462 | || || | ||| ||| ||||| || ||||| |||||| ||||||| || Sbjct 1232702 CAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCA 1232643 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || |||| || ||||| || || || ||||| || Sbjct 1232642 GGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTA 1232606 >seq6 Length=3085841 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 251468 CCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAAC 251527 ||||| |||| | ||||||||||| ||||||||||||||| |||||||| ||||| | Sbjct 527706 CCTTGAGGAAGGACGCTGCACCGTGTGCAATCATACAATCACGTTCCATTTCTCCGAATC 527647 Query 251528 GAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGAC 251587 | ||||||||||| ||||| | |||||| | ||||| || || | | || ||||| Sbjct 527646 GGAGACCACCATCTCGAGCACGACCCTCCACTGGCTGCCGTGTCATGATCTGCACAGGAC 527587 Query 251588 CGATGGAGC---GGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 | |||| ||| ||| ||| || | ||||| || ||| ||||||||| ||| Sbjct 527586 C--ACGAGCTCTGGC-ATGGATCTTGTCGTCCACCATGTGGCGGAGTCGCTGGTAGTATG 527530 Query 251645 CGGGACCGATGAA 251657 || || | ||| Sbjct 527529 TTGGTCCAAAGAA 527517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817166273751