Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F001599035.1_202016-03- 01] 23 sequences; 37,316,984 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-25 seq1 131 2e-24 seq9 120 4e-21 seq4 105 8e-17 >seq7 Length=2824016 Score = 134 bits (148), Expect = 2e-25 Identities = 208/290 (72%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| ||||| |||||||| || | ||| Sbjct 1203109 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTT 1203050 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| | || || ||| ||||| ||||||||||| |||| Sbjct 1203049 CTTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCGACGGCAGCAA 1202991 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | || |||| |||||| | ||| |||||| | ||||||||| || | Sbjct 1202990 AGGCAACAAGGCGCTGAGCAAAG--GAAGAG----TCCTTGTCCTGGATCCACTTGATGG 1202937 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 869414 ||||||| ||||| || | | | || | || || |||||| ||||||| || Sbjct 1202936 CCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGC 1202877 Query 869415 TTTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | | |||||||| ||||||||||| || || || |||||||| Sbjct 1202876 GCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 1202828 Score = 123 bits (136), Expect = 3e-22 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | || ||||| Sbjct 1203423 GCCTTTTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 1203364 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | || ||||||| | |||||| ||| ||| || |||||||| Sbjct 1203363 TTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGACG 1203304 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 ||||| || ||||| |||||||| |||||||| ||| ||| |||||||||||| | Sbjct 1203303 --AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCA 1203246 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| || |||| |||||| |||||| || || Sbjct 1203245 GCAGAGCACAGGGGAGAGCCTCGGTCAAGAATTCTTGCTCGATTCTGACGGCATCAGTGA 1203186 Query 868929 TGAT 868932 |||| Sbjct 1203185 TGAT 1203182 >seq1 Length=7294945 Score = 131 bits (144), Expect = 2e-24 Identities = 186/259 (72%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 1233037 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1232978 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||| | || || | ||| || | ||| Sbjct 1232977 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1232918 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || || ||||||||||| |||| Sbjct 1232917 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTTAGAGTGTCGTAGATACCCT 1232859 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || |||| ||||||||||||| || ||||| || || || | || | || | Sbjct 1232858 CAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTAC 1232799 Query 1630304 CGGCGTTGAAGAGCGTGGG 1630322 | ||||||||||| ||||| Sbjct 1232798 CAGCGTTGAAGAGGGTGGG 1232780 Score = 123 bits (136), Expect = 3e-22 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| | ||| || ||||||||||| ||||| | || |||||| |||| |||||||||| Sbjct 1315053 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 1315112 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1315113 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 1315155 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||| || ||||| || || ||| ||| ||||||||||||||||| || Sbjct 1233173 TCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGA 1233114 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || | || | | ||||||||||| ||||| |||||| ||||||||| || Sbjct 1233113 GGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAG 1233054 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 1233053 GGCGCTTGTTGCCACC 1233038 >seq9 Length=1326442 Score = 120 bits (132), Expect = 4e-21 Identities = 304/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 1852175 TTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCC 1852234 || ||||||||| | || ||||||||||| |||||||| |||| |||||| || ||| || Sbjct 245710 TTACGCTGGTCGAGACCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCATCCAGGACC 245769 Query 1852235 TGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCTG 1852293 |||| || ||||||||||| | ||| ||| ||| | || | |||||| |||| Sbjct 245770 TGCAGGATCGGGTAGAGCAGGCCCGACAGCGGCGCATTGTCCGT-CTGCTTGACAACCTC 245828 Query 1852294 AGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCGAGTCGGTAGAGGTC 1852350 ||| ||||| || ||| ||||| ||| | | | || || || ||||| ||| Sbjct 245829 GGCGCCGGCCCTCTTGGCGTCGTGCTCGGAG---ATGACCGACGACAGCTTGTAGACGTC 245885 Query 1852351 GAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAG 1852410 | ||| || || ||||||| | |||| | ||||||| ||| | | | | Sbjct 245886 CATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAG-CTTCTCGG 245944 Query 1852411 CGG-CACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGT 1852469 || |||||||| | || || ||||| ||||| | || ||| | || Sbjct 245945 TGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAACTCGCA 246004 Query 1852470 GTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGA 1852529 | |||||||| || |||| || |||||||||| | |||| | |||||| | | Sbjct 246005 GCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCGTGGATGTCGGCGAGCA 246064 Query 1852530 GGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGT 1852589 ||||| |||| | ||||| || ||| | | ||| | ||||| | ||| ||||||| Sbjct 246065 GGATCGTGACATGGCAGCCAGCGGCCAGATACTGGGCGATTTTGATGGCGGGGACAAAGT 246124 Query 1852590 AGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCC 1852623 |||| ||| ||| ||| || | || ||||| Sbjct 246125 AGCCGCAGTGAGGGCGGCCGGTTGTGGCGGTGCC 246158 >seq4 Length=4000284 Score = 105 bits (116), Expect = 8e-17 Identities = 208/301 (69%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGACGATGCGCGGGATCTT 92674 || ||| |||||| | ||| | || | || | |||||| ||| |||||||||| | ||| Sbjct 556172 GTCAGGCGCTCCTGGATCTGCA-GCCGCCGCGCAAACATCTCGGCGATGCGCGGCAGCTT 556114 Query 92675 GCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGG 92734 ||| | ||| || | | |||| | |||||| | ||| ||||||||||||||| Sbjct 556113 GCTGATGCCAATCACGGCGTTGTTGGGGATGTAGCCAATGTGCATCTTGCCCATAAAGGG 556054 Query 92735 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCC 92794 || ||| ||||||||||||| |||| | | ||| | ||| || |||||||| ||| Sbjct 556053 CACCAGGTGGTGCTCGCACAGGGAGTAGACGTCAATGTCCTTGACAATCACCATTTCGTT 555994 Query 92795 CGAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGTCATGC-GGTGGC 92850 | |||| || ||| ||| ||| | | ||| || | ||| | | ||| || Sbjct 555993 GTGGCCCTCTTGGAAAATGGCGCCGTTGACAATGTCCGAG----ATGTCCTCCTGGTAGC 555938 Query 92851 CGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGC 92910 | || |||| ||||||||| || |||| ||||||| | ||||||||||||| Sbjct 555937 CCTTTGTAAAGTCCAGCATGGCCTTTGCGTAGCGCTGCGGCGTGGCGAGGAGGCCCTCGC 555878 Query 92911 G 92911 | Sbjct 555877 G 555877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137312512291